PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676706490
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 322aa    MW: 37051.3 Da    PI: 6.8049
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676706490genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.76.3e-3269138271
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk 71 
                lfqrlw++eDei lLqG+idfka+tgksp++d+d+fye  +ksisf+vsk+q+++Kir+LKkK+ kkv+ 
  676706490  69 LFQRLWTDEDEIYLLQGMIDFKADTGKSPKQDLDRFYELTRKSISFEVSKNQFLDKIRSLKKKYIKKVNL 138
                79***************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-2370137IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAKKKLNPPP SSSIHEEEEA EEQISDGSSP KEEEEAAVKS GKKRERGKTS KQVNAKRSKK  60
IVEDSKKHLF QRLWTDEDEI YLLQGMIDFK ADTGKSPKQD LDRFYELTRK SISFEVSKNQ  120
FLDKIRSLKK KYIKKVNLWG VEAFLKANGD NVEEDREVLA DVEEDREVLV NGEKVEEVRE  180
VLVGGKKVEE DKEVLVNGGD SKWSMVCVET KKRMEENWKL LQAKEMELVL QKTDFMRELN  240
AYVHSVSSAM LRQSNNSLLP VKLYVSVEKP FSQHYLASFL VCVYINSHSE LQQFNSVLCM  300
FIKYPSQNHL IALISNQNIL AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046GKKRERG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676706490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477165.12e-69PREDICTED: probable transcription factor At1g44810
SwissprotQ9SYA95e-43STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLM4EV841e-65M4EV84_BRARP; Uncharacterized protein
STRINGBra032717.1-P2e-66(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-36DNA-binding storekeeper protein-related transcriptional regulator