PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676702456

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HSF

Protein Properties

Length: 462aa MW: 51851.4 Da PI: 6.3378

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676702456	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.1	1.6e-34	17	107	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d+++++++sws+++nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF ++ F k++k+ll++i+ 676702456 17 FLVKTYEMVDDSSTDQIVSWSSTNNSFIVWNQAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFLNDDFIKDQKHLLKNIH 104 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k 676702456 105 RRK 107 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.2E-61	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.44E-35	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.3E-37	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-29	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-19	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-19	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-19	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
TSASVNGGEG AGGPAPFLVK TYEMVDDSST DQIVSWSSTN NSFIVWNQAE FSRLLLPTYF 60 KHNNFSSFIR QLNTYGFRKI DPERWEFLND DFIKDQKHLL KNIHRRKPIH SHSQPPVSSV 120 DQERAALQEQ MDNLSREKAA IEAKLIKFKQ QKSTAKHNLD EMTEHVDDME KRQKSLLSFL 180 ETAIRNPTFI KNFGRKIEQL DVSAYNKKRR LPQVEQSKPP SEDSHLDNSS GSSRPESGNI 240 FHQNFSSKLR LELSPAVSDM NMVSHSIQSS NEEGASPKGI LSGSEPKTTQ TRREGLPFAP 300 EPLELADTGS CPGILLLNDN TRAESLQQKI TSSEETDGFS CHLNLTLASA PLPDKTASQI 360 AKTTHKSQET GRSTELNFNS IETSEKNRGE QDVVVGGKQA NAAPPARVND LFWEQFLTER 420 PGASDNEEAS STYRANPYEE QEEKRNGHTM SRNTKNIEQL TL

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

TSASVNGGEG AGGPAPFLVK TYEMVDDSST DQIVSWSSTN NSFIVWNQAE FSRLLLPTYF  60
KHNNFSSFIR QLNTYGFRKI DPERWEFLND DFIKDQKHLL KNIHRRKPIH SHSQPPVSSV  120
DQERAALQEQ MDNLSREKAA IEAKLIKFKQ QKSTAKHNLD EMTEHVDDME KRQKSLLSFL  180
ETAIRNPTFI KNFGRKIEQL DVSAYNKKRR LPQVEQSKPP SEDSHLDNSS GSSRPESGNI  240
FHQNFSSKLR LELSPAVSDM NMVSHSIQSS NEEGASPKGI LSGSEPKTTQ TRREGLPFAP  300
EPLELADTGS CPGILLLNDN TRAESLQQKI TSSEETDGFS CHLNLTLASA PLPDKTASQI  360
AKTTHKSQET GRSTELNFNS IETSEKNRGE QDVVVGGKQA NAAPPARVND LFWEQFLTER  420
PGASDNEEAS STYRANPYEE QEEKRNGHTM SRNTKNIEQL TL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-24	8	106	17	129	Heat shock factor protein 1
5d5v_B	1e-24	8	106	17	129	Heat shock factor protein 1
5d5v_D	1e-24	8	106	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676702456

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013637590.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_013637593.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A3P6BZV8	0.0	A0A3P6BZV8_BRACM; Uncharacterized protein
STRING	Bo4g128450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]