PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676702116
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 136aa    MW: 15839.5 Da    PI: 10.3363
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676702116genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind56.48e-18792292
                  HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
  HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
                  F  kly+i++d++ + ++sw+ +n++sf+v+d ++f++++L+k F   ++ + F+ QL   gF+ +++  ++        eF+h+ F kg  +
     676702116  7 FYIKLYQIVDDPSSDAIVSWNkSNNQSFIVWDLKRFQREILSKSFLMgRSTKQFMAQLRSRGFQVIEKGPGE-------LEFSHDDFAKGLLN 92
                  899******************8899******************9987256899***************9999.......********998654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-11397IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-18589IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-14589IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.2E-14790IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-6730IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-66072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEYSSPFYIK LYQIVDDPSS DAIVSWNKSN NQSFIVWDLK RFQREILSKS FLMGRSTKQF  60
MAQLRSRGFQ VIEKGPGELE FSHDDFAKGL LNKILVKDLS QRIQKLDDQV KVMKCRIKAK  120
KAAVKVDSLF QNLRIC
Cis-element ? help Back to Top
SourceLink
PlantRegMap676702116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745665.16e-57heat shock factor protein HSF8-like
TrEMBLM4EA014e-55M4EA01_BRARP; Uncharacterized protein
STRINGBra025608.1-P7e-56(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.11e-25Winged helix-turn-helix transcription repressor DNA-binding