PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676700478

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GRAS

Protein Properties

Length: 290aa MW: 32905.7 Da PI: 4.6249

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676700478	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	246	1.5e-75	1	287	96	373
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledl 189 ++aN aIl aveg ++vH +D+++++++Q p+L++a+as+ ++pp l++T+v+s++++ + ++ee+g++L +fA++ ++++ef+++ +++ +++l 676700478 1 MAANAAILTAVEGYSMVHMVDLSLTHCMQIPTLIDAMASKLNKPPLLKLTVVSSASNFppfINISYEELGSKLVSFANTRNIEMEFTIIpstYSDGFSSL 100 58**************************************************99999999**********************988667778888 PP GRAS 190 eleeLrvkp...gEalaVnlvlqlhrlldesvs..les..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 le+Lrv p +Eal+Vn+ ++l +++de+++ l+s r+ +L++++sl+P+vv+++e+++d++s ++++r+ +a++y++ fd++++ + se+r 676700478 101 -LEQLRVYPtsfNEALVVNCNMMLRYIPDETLApsLSSlsLRNVFLNQLRSLNPTVVTLIEEDVDLTSDNLVTRLRSAFNYFWIPFDTTDTFM---SEQR 196 .***********************99764113335599**********************************************7...9* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +++E+e ++++i+nvv +eg er+er+et+++W er++ea F+ v+++e+a+++ k++l +++ ++g++ +++++slvl+Wk++++v++++W 676700478 197 KWYEAE-ISWKIENVVGKEGVERVERTETKRRWLERMREAEFGGVRVQEEAVSDLKAMLGEHAvGWGMKKDDDDESLVLTWKGHSVVFATVW 287 ****.*********************************************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.604	1	267	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-73	1	287	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAANAAILTA VEGYSMVHMV DLSLTHCMQI PTLIDAMASK LNKPPLLKLT VVSSASNFPP 60 FINISYEELG SKLVSFANTR NIEMEFTIIP STYSDGFSSL LEQLRVYPTS FNEALVVNCN 120 MMLRYIPDET LAPSLSSLSL RNVFLNQLRS LNPTVVTLIE EDVDLTSDNL VTRLRSAFNY 180 FWIPFDTTDT FMSEQRKWYE AEISWKIENV VGKEGVERVE RTETKRRWLE RMREAEFGGV 240 RVQEEAVSDL KAMLGEHAVG WGMKKDDDDE SLVLTWKGHS VVFATVWVPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	1e-36	1	289	184	474	Protein SHORT-ROOT
5b3h_B	6e-37	1	289	130	420	Protein SHORT-ROOT
5b3h_E	6e-37	1	289	130	420	Protein SHORT-ROOT
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676700478

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404086.1	0.0	scarecrow-like protein 32
Swissprot	Q9SN22	0.0	SCL32_ARATH; Scarecrow-like protein 32
TrEMBL	A0A397XZB3	0.0	A0A397XZB3_BRACM; Uncharacterized protein
STRING	XP_006404086.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5445	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	1e-172	GRAS family protein