PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011102259.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25467.2 Da    PI: 9.7876
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011102259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRrng+lKKA ELSvLCdaeva+iifs++gklye++s
  XP_011102259.1  9 KRIENKINRQVTFSKRRNGLLKKACELSVLCDAEVALIIFSNKGKLYEFCS 59
                    79***********************************************96 PP
2K-box77.14.5e-268515926100
           K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ +nLq++qRhllGedL++L  keL qLe+ L++slk+iR k++++++eq++ lq+kek+l e n+aLr+klee
  XP_011102259.1  85 NNAQNLQQSQRHLLGEDLGKLGPKELDQLETMLDTSLKQIRLKQTQHMFEQLSGLQQKEKNLMEVNRALRSKLEE 159
                     6789********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.165161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-34282IPR002100Transcription factor, MADS-box
CDDcd002651.16E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.50273163IPR002487Transcription factor, K-box
PfamPF014864.7E-2186157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRNGLLK KACELSVLCD AEVALIIFSN KGKLYEFCST  60
SSMSKTLERY HKSSYGPIEA HQSPNNAQNL QQSQRHLLGE DLGKLGPKEL DQLETMLDTS  120
LKQIRLKQTQ HMFEQLSGLQ QKEKNLMEVN RALRSKLEET NAAIRETWQQ GERNMPYRPL  180
QLAQPEAFLE PLGCNNTAQI QYRLSAPNNA AENAKGMLPG WMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-22195190MEF2 CHIMERA
6byy_B5e-22195190MEF2 CHIMERA
6byy_C5e-22195190MEF2 CHIMERA
6byy_D5e-22195190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011102259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102259.11e-165developmental protein SEPALLATA 1-like
SwissprotK4BND81e-90MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A2G9HS331e-101A0A2G9HS33_9LAMI; MADS box transcription factor
STRINGPGSC0003DMT4000728911e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.13e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]