PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011102254.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | DBB | ||||||||
Protein Properties | Length: 219aa MW: 24553.1 Da PI: 4.863 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.8 | 4.4e-08 | 17 | 58 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+ ++e ++ l+C+ ++ lC +C e H+ H++ XP_011102254.1 17 RLCDFCNESKALLYCRADSARLCFNCDREVHSTnplfkkHNR 58 78******99*********************66777777876 PP | |||||||
2 | zf-B_box | 24.6 | 5.3e-08 | 59 | 102 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+ +++ + ++fC + + lC++C e H++ H+++p+ XP_011102254.1 59 SLLCDSCNSSPSSIFCCSESAVLCQNCDWENHNNfksiHDRRPI 102 568*****************************99999**99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.4E-14 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.48 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.7E-7 | 17 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.15E-7 | 17 | 61 | No hit | No description |
PROSITE profile | PS50119 | 10.651 | 57 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-5 | 59 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.98E-6 | 61 | 102 | No hit | No description |
SMART | SM00336 | 0.19 | 62 | 102 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSVADQENYD FGDRGGRLCD FCNESKALLY CRADSARLCF NCDREVHSTN PLFKKHNRSL 60 LCDSCNSSPS SIFCCSESAV LCQNCDWENH NNFKSIHDRR PIEGFNGCPS VSELLNFLGL 120 EDLGKKSLVF GGGNDEGFLD LLVWETPAVV SLDDLIVSNN SVDSGLSFQA MGVPPLPKVC 180 ALFLGKICFL KIMICVFPFS SKRGCWDCTL WFFLYLWFI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011102254.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102254.1 | 1e-159 | zinc finger protein CONSTANS-LIKE 13-like | ||||
Swissprot | O82256 | 3e-56 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A097DC82 | 7e-94 | A0A097DC82_9MYRT; Zinc finger protein CONSTANS-LIKE 9 | ||||
STRING | Migut.D00173.1.p | 1e-88 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7362 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.2 | 3e-45 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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