PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011102172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | AP2 | ||||||||
Protein Properties | Length: 433aa MW: 47365.5 Da PI: 8.6991 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 157 | 206 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_011102172.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 206 78*******************......55**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-15 | 157 | 215 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-8 | 157 | 206 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.714 | 158 | 214 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-17 | 158 | 214 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-10 | 158 | 216 | No hit | No description |
SMART | SM00380 | 1.1E-31 | 158 | 220 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MLDLNVDAGL SVESASCEDE NDRKVTNTGD ADSVTSTTTN NNVAFAADEL DSNSSTRRSA 60 VPTLNFSILH RNVIDIDHDV NNGVARNMTE LQLFPVGASC SLPAMDRANY WLNLSAMEVS 120 GGGGAELGVF KAQVPPNNQL QKPPAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HAAARAYDRA AVKFRGVDAD INFNITDYEE DMKQMKNLTK EEFVQILRRQ 240 NTGFSRGSSK YRGVSLHKYG LREAHMGQFL GEKDHDKAAV TNFMPGNYKG EINRISTDGG 300 SGRNLDLNLG ISLASDGPQR NGTTNNLHFA YASYELPDGK RVKVEASSAS SHGLVITTRY 360 APIGAGIFYG ISPNSEERPT GTRTEAIHLP GFSSWPWQRQ IHGLVDTAPL LSSAASSRFS 420 STTSPYSKTP PSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011102172.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102172.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
TrEMBL | A0A2G9HWF3 | 0.0 | A0A2G9HWF3_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F01790.1.p | 1e-143 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 2e-72 | related to AP2.7 |