PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011102159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | AP2 | ||||||||
Protein Properties | Length: 400aa MW: 44044.8 Da PI: 8.9691 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 1e-16 | 157 | 206 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_011102159.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 206 78*******************......55**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-8 | 157 | 206 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-16 | 157 | 215 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.714 | 158 | 214 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.03E-11 | 158 | 216 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-17 | 158 | 214 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-31 | 158 | 220 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MLDLNVDAGL SVESASCEDE NDRKVTNTGD ADSVTSTTTN NNVAFAADEL DSNSSTRRSA 60 VPTLNFSILH RNVIDIDHDV NNGVARNMTE LQLFPVGASC SLPAMDRANY WLNLSAMEVS 120 GGGGAELGIF KAQVPPNNQL QKPPAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HAAARAYDRA AVKFRGVDAD INFNITDYEE DMKQMKNLTK EEFVQILRRQ 240 NTGFSRGSSK YRGVSLHKYG LREAHMGQFL GEKDHDKAAV TNFMPGNYKG EINRISTDGG 300 SGRNLDLNLG ISLASDGPQR NGTTNNLHFA YASYELPDGK RVKERPTGTR TEAIHLPGFS 360 SWPWQRQIHG LVDTAPLLSS AASSRFSSTT SPYSKTPPSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011102159.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102159.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 2e-73 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A2G9HWF3 | 1e-164 | A0A2G9HWF3_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F01790.1.p | 1e-135 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 4e-71 | related to AP2.7 |