PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011102155.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28136.7 Da    PI: 9.7671
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011102155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_011102155.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box113.71.7e-37921893100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +s++ s +ea+++++qqe++kL+++i+nLq+++R++lGe+L+ L+l++L++Le+++e+++++iRskKnell+++ie++qk+e +l+++n+ Lr+k
  XP_011102155.1  92 SSNNGSISEANTQYYQQEASKLRAQISNLQNQNRNMLGESLGALTLRDLKNLESRVERGISRIRSKKNELLFAEIEYMQKREIDLHHNNQFLRAK 186
                     3344449**************************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_011102155.1 187 IAE 189
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.2631777IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-401776IPR002100Transcription factor, MADS-box
CDDcd002651.34E-461894No hitNo description
SuperFamilySSF554551.96E-331892IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-331939IPR002100Transcription factor, MADS-box
PfamPF003199.0E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-335475IPR002100Transcription factor, MADS-box
PfamPF014861.7E-26101187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.811103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEFPSDQSRE MSPQRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVKA TIERYKKASS DSSNNGSISE ANTQYYQQEA SKLRAQISNL  120
QNQNRNMLGE SLGALTLRDL KNLESRVERG ISRIRSKKNE LLFAEIEYMQ KREIDLHHNN  180
QFLRAKIAET ERAQQHMNLM PGSSEFELVQ QPQHFDARNY LQVNGLQPND DYPRPDQPPL  240
QLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-2118101186Myocyte-specific enhancer factor 2A
3kov_B4e-2118101186Myocyte-specific enhancer factor 2A
3kov_I4e-2118101186Myocyte-specific enhancer factor 2A
3kov_J4e-2118101186Myocyte-specific enhancer factor 2A
3p57_A4e-2118101186Myocyte-specific enhancer factor 2A
3p57_B4e-2118101186Myocyte-specific enhancer factor 2A
3p57_C4e-2118101186Myocyte-specific enhancer factor 2A
3p57_D4e-2118101186Myocyte-specific enhancer factor 2A
3p57_I4e-2118101186Myocyte-specific enhancer factor 2A
3p57_J4e-2118101186Myocyte-specific enhancer factor 2A
5f28_A4e-2118101287MEF2C
5f28_B4e-2118101287MEF2C
5f28_C4e-2118101287MEF2C
5f28_D4e-2118101287MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011102155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1900760.0KM190076.1 Sesamum indicum cultivar Rajeswari AGAMOUS (AG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102155.11e-180floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408851e-150AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A097CK551e-172A0A097CK55_SESIN; AGAMOUS
STRINGMigut.M00986.1.p1e-153(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-112MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]