PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011102154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28264.8 Da PI: 9.7671 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_011102154.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 106.5 | 3.2e-35 | 92 | 190 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrk 96 +s++ s +ea+++++qqe++kL+++i+nLq+++R++lGe+L+ L+l++L++Le+++e+++++iRskKnell+++ie++qk+ e +l+++n+ Lr+ XP_011102154.1 92 SSNNGSISEANTQYYQQEASKLRAQISNLQNQNRNMLGESLGALTLRDLKNLESRVERGISRIRSKKNELLFAEIEYMQKRqEIDLHHNNQFLRA 186 3344449***********************************************************************9984679********** PP K-box 97 klee 100 k++e XP_011102154.1 187 KIAE 190 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.263 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-40 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.31E-46 | 18 | 94 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-33 | 18 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.9E-25 | 101 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.782 | 103 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEFPSDQSRE MSPQRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVKA TIERYKKASS DSSNNGSISE ANTQYYQQEA SKLRAQISNL 120 QNQNRNMLGE SLGALTLRDL KNLESRVERG ISRIRSKKNE LLFAEIEYMQ KRQEIDLHHN 180 NQFLRAKIAE TERAQQHMNL MPGSSEFELV QQPQHFDARN YLQVNGLQPN DDYPRPDQPP 240 LQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-21 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
5f28_A | 4e-21 | 18 | 101 | 2 | 87 | MEF2C |
5f28_B | 4e-21 | 18 | 101 | 2 | 87 | MEF2C |
5f28_C | 4e-21 | 18 | 101 | 2 | 87 | MEF2C |
5f28_D | 4e-21 | 18 | 101 | 2 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011102154.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM190076 | 0.0 | KM190076.1 Sesamum indicum cultivar Rajeswari AGAMOUS (AG) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102153.1 | 0.0 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q40885 | 1e-148 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A097CK55 | 1e-174 | A0A097CK55_SESIN; AGAMOUS | ||||
STRING | Migut.M00986.1.p | 1e-155 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-110 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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