PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101980.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 796aa    MW: 85756.4 Da    PI: 6.4703
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.42e-1264247792374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs+++le+a+++L ++s+la+p g++ qR+aayf eA++ar+++s+ ++y+alp+ + s     + ++a+++f+ +sP++kfsh+
  XP_011101980.1 424 LTLLLQCAEAVSADNLEEANRMLLEISQLATPFGTSAQRVAAYFSEAMSARIVSSCLGIYAALPTVPHS----PKMASAFQVFNGISPFVKFSHF 514
                     579*************************************************************99996....78999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+g+p +R+Tg+g+    s+e+le+tg+rL++fAe+lg+pfef++ va+++ +l++
  XP_011101980.1 515 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGAPFVRLTGLGN----SREALEATGKRLSDFAEKLGLPFEFSP-VAEKVGNLNP 604
                     *****************************************************....9**************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE
  XP_011101980.1 605 ERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLCPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVE 692
                     ****************9..999999999999....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+   g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  XP_011101980.1 693 QQLLSREIRNVLGVGGPSRSGEVK-FNNWREKLQQSGFKGISLAGNAAAQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTASAWR 779
                     ******************888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.152397759IPR005202Transcription factor GRAS
PfamPF035147.1E-124424779IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MAAKAFPLVG EADNYANGCG NCAGETPVPS DHLHPNLSNV LTIINPLHSP QAQGSKIVRK  60
RAASEMETQS IAGNGARFPR RTATPHGDYA ICSVVTPPPP PNPTPQHSTQ VPNYSTMTMM  120
LPSSTNFNLI MTSSKSGSGS DTAPAFSTSY TSTAAAPAIT NYMDSTSSSL SSQSHQASSS  180
APPSVCVFSG LPLFPPERNR GATGLQLSPA TGCSSLGTED TTAWIDAIIK DLINSSNQVS  240
VPQLILNVRE IIHPCNPNLA ALLEYRLRSL TAPADDRRRK EALPPPPSFH SNSGLRLHLQ  300
ADNSLLLPQG ITVESLNHWP SPTAGNTNYL QNNNLSTLSP TSTASLSFTA PSTVLSNSDQ  360
AVTLVSQPEA TQPQEQQQKS PSTEPTTTAT RTTSPSTTPA LETIRERKQE MQQQQKDEEG  420
LHLLTLLLQC AEAVSADNLE EANRMLLEIS QLATPFGTSA QRVAAYFSEA MSARIVSSCL  480
GIYAALPTVP HSPKMASAFQ VFNGISPFVK FSHFTANQAI QEAFEREDRV HIIDLDIMQG  540
LQWPGLFHIL ASRPGGAPFV RLTGLGNSRE ALEATGKRLS DFAEKLGLPF EFSPVAEKVG  600
NLNPERLNVS KREAVAVHWL QHSLYDVTGS DTNTLWLLQR LCPKVVTVVE QDLSHAGSFL  660
GRFVEAIHYY SALFDSLGAC YGEESEERHV VEQQLLSREI RNVLGVGGPS RSGEVKFNNW  720
REKLQQSGFK GISLAGNAAA QATLLLGMFP SDGYTLVEDN GALKLGWKDL CLLTASAWRP  780
SLPAATASRH FQSSIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04077803380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0444751e-53KJ044475.1 Sesamum indicum clone TilSSR_15676 microsatellite Sesame_15676 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101980.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2G9G7V00.0A0A2G9G7V0_9LAMI; Uncharacterized protein
STRINGMigut.J00002.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein