PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011101887.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 574aa MW: 64351.8 Da PI: 4.7536

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011101887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	451.8	4.3e-138	206	574	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lLlecA a+++g++e+a+++++ l++++s +g+p +R+aay++eALaar+a s+++ly+al+++e++ sse+l+a+++++ev+P+++f+++t XP_011101887.1 206 SLLLECAAAIHNGNFEEASHMINVLRQRVSIQGEPSERIAAYMVEALAARIATSGKGLYRALKCKEQP---SSERLSAMQVLFEVCPCFRFGFMT 297 79***************************************************************9...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN aIlea e e+rvHiiDfd++qG Q+ +Llq+La+ p++ p++R+Tgv++pes+ l+ +g+rL+++Ae l+++fef++ va +++ ++ XP_011101887.1 298 ANGAILEACEDEKRVHIIDFDVNQGSQYYTLLQTLAKSPGKRPHVRLTGVDDPESVqrAVGGLKIIGRRLEQLAEDLQLSFEFDA-VAAETALVS 391 **************************************************99878889*******************.7999* PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +++L+++pgEa++Vn+++qlh+++desvs+ + rd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+a+lpr+s++r++v XP_011101887.1 392 PSMLDCQPGEAVVVNFAFQLHHMPDESVSTVNLRDQLLRMVKSLKPKLVTVVEQDVNTNTAPFLSRFAEAYNYYSAVFESLDATLPRDSQDRMNV 486 ******************************************************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++l+r+i nvvaceg+er+er e ++kWr+r+++aGF+p p+s++ + +++ l+ +++++ y+v+ee g+l +gW+d+ L++ SaWr XP_011101887.1 487 EKQCLARDIINVVACEGEERIERYEVAGKWRARMSMAGFSPCPISQNLNIEIRKLITQYSDR-YKVKEETGALHFGWEDKILIVSSAWR 574 ********************************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.09	178	555	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-135	206	574	IPR005202	Transcription factor GRAS
Gene3D	G3DSA:3.40.50.150	2.6E-4	338	530	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MSLVRSAALF RNREVYSRKD GNDSSGVSTS IFNTDNRGII YSSESYSSDS YDPKYFLDSP 60 SDDLVHTSGS DASENPFHQP RASSYQLMAG NGSLTSSLAT KRHNAYEFNY ESEYFDSQSP 120 DAIDYDESKM RLKLQELEKA LLDDNATNDD DSDNHEHSME IDGEWSDTTR YPLLYNSPKE 180 SSSSDSILSS TSSTKEISFT TLTPKSLLLE CAAAIHNGNF EEASHMINVL RQRVSIQGEP 240 SERIAAYMVE ALAARIATSG KGLYRALKCK EQPSSERLSA MQVLFEVCPC FRFGFMTANG 300 AILEACEDEK RVHIIDFDVN QGSQYYTLLQ TLAKSPGKRP HVRLTGVDDP ESVQRAVGGL 360 KIIGRRLEQL AEDLQLSFEF DAVAAETALV SPSMLDCQPG EAVVVNFAFQ LHHMPDESVS 420 TVNLRDQLLR MVKSLKPKLV TVVEQDVNTN TAPFLSRFAE AYNYYSAVFE SLDATLPRDS 480 QDRMNVEKQC LARDIINVVA CEGEERIERY EVAGKWRARM SMAGFSPCPI SQNLNIEIRK 540 LITQYSDRYK VKEETGALHF GWEDKILIVS SAWR

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MSLVRSAALF RNREVYSRKD GNDSSGVSTS IFNTDNRGII YSSESYSSDS YDPKYFLDSP  60
SDDLVHTSGS DASENPFHQP RASSYQLMAG NGSLTSSLAT KRHNAYEFNY ESEYFDSQSP  120
DAIDYDESKM RLKLQELEKA LLDDNATNDD DSDNHEHSME IDGEWSDTTR YPLLYNSPKE  180
SSSSDSILSS TSSTKEISFT TLTPKSLLLE CAAAIHNGNF EEASHMINVL RQRVSIQGEP  240
SERIAAYMVE ALAARIATSG KGLYRALKCK EQPSSERLSA MQVLFEVCPC FRFGFMTANG  300
AILEACEDEK RVHIIDFDVN QGSQYYTLLQ TLAKSPGKRP HVRLTGVDDP ESVQRAVGGL  360
KIIGRRLEQL AEDLQLSFEF DAVAAETALV SPSMLDCQPG EAVVVNFAFQ LHHMPDESVS  420
TVNLRDQLLR MVKSLKPKLV TVVEQDVNTN TAPFLSRFAE AYNYYSAVFE SLDATLPRDS  480
QDRMNVEKQC LARDIINVVA CEGEERIERY EVAGKWRARM SMAGFSPCPI SQNLNIEIRK  540
LITQYSDRYK VKEETGALHF GWEDKILIVS SAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-65	210	573	24	377	Protein SCARECROW
5b3h_D	1e-65	210	573	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011101887.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101883.1	0.0	scarecrow-like protein 1
Refseq	XP_011101887.1	0.0	scarecrow-like protein 1
Refseq	XP_011101891.1	0.0	scarecrow-like protein 1
Refseq	XP_011101898.1	0.0	scarecrow-like protein 1
Refseq	XP_020547813.1	0.0	scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A068UU85	0.0	A0A068UU85_COFCA; Uncharacterized protein
STRING	XP_009628410.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]