PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101813.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 196aa    MW: 21789 Da    PI: 10.3343
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-183683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl
   XP_011101813.1 36 RGPWTAEEDELLAAYIKREGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 83
                     89******************************99************97 PP

2Myb_DNA-binding36.61.1e-111011311648
                      HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +++lG++ W++Ia +++ gRt++++k++w+++l
   XP_011101813.1 101 HRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 131
                      7889999.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-212886IPR009057Homeodomain-like
PROSITE profilePS5129421.0683187IPR017930Myb domain
SuperFamilySSF466891.57E-2533127IPR009057Homeodomain-like
SMARTSM007173.3E-123585IPR001005SANT/Myb domain
PfamPF002493.2E-153683IPR001005SANT/Myb domain
CDDcd001675.45E-113883No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1987136IPR009057Homeodomain-like
SMARTSM007176.2E-988133IPR001005SANT/Myb domain
PROSITE profilePS5129416.06288135IPR017930Myb domain
PfamPF002495.4E-1093131IPR001005SANT/Myb domain
CDDcd001672.26E-993131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MRSPLQLSPS KQTPGGGGSS KKADSVACCS NVGLKRGPWT AEEDELLAAY IKREGEGRWR  60
TLPKKAGLLR CGKSCRLRWM NYLLPSVKRG HISPDEEDLI HRLLGNRWSL IAGRIPGRTD  120
NEIKNYWNTH LSKKLISQGI DPKTHKPLNP NPIDHNKKLE QCYASSASYH HQHVPFASAL  180
KDGNGMMSKG DGSIKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23341355108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101813.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101813.11e-144transcription repressor MYB5-like
SwissprotQ388503e-73MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2G9G0C02e-83A0A2G9G0C0_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.D02551.1.p2e-81(Erythranthe guttata)
STRINGXP_010112641.15e-81(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-75myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]