PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 21789 Da PI: 10.3343 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.2e-18 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl XP_011101813.1 36 RGPWTAEEDELLAAYIKREGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 83 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 36.6 | 1.1e-11 | 101 | 131 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++lG++ W++Ia +++ gRt++++k++w+++l XP_011101813.1 101 HRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 131 7889999.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-21 | 28 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.068 | 31 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-25 | 33 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-12 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 36 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.45E-11 | 38 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 87 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-9 | 88 | 133 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.062 | 88 | 135 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.4E-10 | 93 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-9 | 93 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MRSPLQLSPS KQTPGGGGSS KKADSVACCS NVGLKRGPWT AEEDELLAAY IKREGEGRWR 60 TLPKKAGLLR CGKSCRLRWM NYLLPSVKRG HISPDEEDLI HRLLGNRWSL IAGRIPGRTD 120 NEIKNYWNTH LSKKLISQGI DPKTHKPLNP NPIDHNKKLE QCYASSASYH HQHVPFASAL 180 KDGNGMMSKG DGSIKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 34 | 135 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101813.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101813.1 | 1e-144 | transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 3e-73 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A2G9G0C0 | 2e-83 | A0A2G9G0C0_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.D02551.1.p | 2e-81 | (Erythranthe guttata) | ||||
STRING | XP_010112641.1 | 5e-81 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-75 | myb domain protein 5 |
Publications ? help Back to Top | |||
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