PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011101506.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 512aa MW: 58285.9 Da PI: 7.4719

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011101506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.7	1.7e-29	87	172	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_011101506.1 87 RWPRQETLTLLEIRSRLNPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 172 8***********************************999*************************98..55667*****85 PP
2	trihelix	57.9	2.6e-18	361	439	2	83
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W+++e+ Li++r+ me ++++ g +++ lWee+++km+ g ers +Ckekw++++ + k+ + +k++ s++c y++ XP_011101506.1 361 WPESEIARLIQLRTAMEVKFQErGVSEEMLWEEIANKMACLGHERSGFMCKEKWDSVSSYLLKCSKKRKEN----SRSCTYYH 439 *******************6478**************************************999984....77899997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.29	84	147	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.015	86	145	IPR017877	Myb-like domain
CDD	cd12203	5.78E-19	87	152	No hit	No description
Pfam	PF13837	3.9E-20	87	173	No hit	No description
SMART	SM00717	2.6	357	420	IPR001005	SANT/Myb domain
Pfam	PF13837	2.0E-13	360	439	No hit	No description
CDD	cd12203	6.71E-18	361	424	No hit	No description
PROSITE profile	PS50090	6.69	361	418	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MEDQYGMADL RQYISGGAFF PATPRPPEFI STNPYDMLMF RSDSTASVTT ANTGGAASSS 60 VAAGGHLISF EMDAGSGGGG GDGGTGRWPR QETLTLLEIR SRLNPKFKEA NQKGPLWDEV 120 SRIMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETNNS 180 SASVSENQFL GGSFHYNFAN NNVCLAHNQE PYPGLKLSDT SLSNSSDAYA TNSSDDSDLN 240 VEKKRRGKRS LKGKIRGFID AQMSKLMEKQ EAWMEKMMSI IEHKEQERML REEEWRKQDS 300 ARIEREQKLW ASERAWIEAR DAALMEAFHR LSGKEIRVVS ENQNVCGNKA MNQNYLRGDI 360 WPESEIARLI QLRTAMEVKF QERGVSEEML WEEIANKMAC LGHERSGFMC KEKWDSVSSY 420 LLKCSKKRKE NSRSCTYYHP NHESGCDQGG VPYCNEQGIE PTIRLNDGGN TPANNNAGNA 480 MNESCFRYFF GDXLWKNYEL KLSKDGQNVY EI

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MEDQYGMADL RQYISGGAFF PATPRPPEFI STNPYDMLMF RSDSTASVTT ANTGGAASSS  60
VAAGGHLISF EMDAGSGGGG GDGGTGRWPR QETLTLLEIR SRLNPKFKEA NQKGPLWDEV  120
SRIMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETNNS  180
SASVSENQFL GGSFHYNFAN NNVCLAHNQE PYPGLKLSDT SLSNSSDAYA TNSSDDSDLN  240
VEKKRRGKRS LKGKIRGFID AQMSKLMEKQ EAWMEKMMSI IEHKEQERML REEEWRKQDS  300
ARIEREQKLW ASERAWIEAR DAALMEAFHR LSGKEIRVVS ENQNVCGNKA MNQNYLRGDI  360
WPESEIARLI QLRTAMEVKF QERGVSEEML WEEIANKMAC LGHERSGFMC KEKWDSVSSY  420
LLKCSKKRKE NSRSCTYYHP NHESGCDQGG VPYCNEQGIE PTIRLNDGGN TPANNNAGNA  480
MNESCFRYFF GDXLWKNYEL KLSKDGQNVY EI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	247	KKRRGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011101506.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547013.1	0.0	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-126	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2G9G8M2	0.0	A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRING	VIT_08s0007g03820.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-116	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]