PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011101501.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27856.5 Da PI: 7.6142 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.2e-20 | 72 | 124 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k XP_011101501.1 72 KKRLSNEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 124 5569************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.7 | 8.8e-40 | 71 | 162 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y+aLkr+yda+++++++L++ev +Lr+ lke XP_011101501.1 71 KKKRLSNEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDALKREYDAVSRDKQKLQQEVMALRAILKE 162 9**************************************************************************************88875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-19 | 53 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.5E-18 | 69 | 130 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.14E-17 | 71 | 127 | No hit | No description |
Pfam | PF00046 | 4.1E-17 | 72 | 124 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-21 | 73 | 133 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.3E-6 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.3E-6 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.8E-9 | 126 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MDWNGNLRVP FVSRPAAVEN SYNFHYNFNY DQFPVLEMKQ PPMLTTPQQA MLPTLADKNN 60 SMMHNFGQDP KKKRLSNEQL ESLENSFQEE IKLDPDRKMK LAKELGLQPR QIAVWFQNRR 120 ARWKAKQLER LYDALKREYD AVSRDKQKLQ QEVMALRAIL KEHLAKKQVL STGYTDISGE 180 ETVESTSIPT SNDPSPPTTT NSLHQINADH QCNNNYGLNV DDYNNPVMMP PYWAAAAAPS 240 CP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 118 | 126 | RRARWKAKQ |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011101501.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101501.1 | 0.0 | putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
TrEMBL | A0A2G9H0S2 | 1e-111 | A0A2G9H0S2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J00491.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-53 | homeobox 51 |