PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101478.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 478aa    MW: 51922.2 Da    PI: 6.7774
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.96.3e-1990176186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L+ea++e+  +l+rg+l++ +Weev++ +  r +  ++s +qCk+k +nl+kryk ++++ +++   s s++p+f+q+e
  XP_011101478.1  90 EWSDTAIACLLEAYSEKFMQLNRGNLRGRDWEEVAAMVseRCENQTKSVEQCKNKVDNLKKRYKLERHRLSNG-GVSASHWPWFKQME 176
                     5*************************************666677899************************99.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-2288178No hitNo description
SMARTSM005950.006998183IPR006578MADF domain
Gene3DG3DSA:3.40.1160.105.0E-69226471IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.224232472IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.96E-54233471IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.56E-119235472No hitNo description
PfamPF006963.4E-22236451IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MASCDDDFSL LDDHQNPNSA QPSTATTTQT PPYQINPYDH DSDPFDSEPD PNTLSGKRLA  60
DRDEIHLGTS KRSRLPGSGG SGDYRKDREE WSDTAIACLL EAYSEKFMQL NRGNLRGRDW  120
EEVAAMVSER CENQTKSVEQ CKNKVDNLKK RYKLERHRLS NGGVSASHWP WFKQMEQIVG  180
NSLAAKAAAE EEKSSAGGGV SYSTRQSKRL GTITNSPGGQ INSVKSKPSN NLRWRRVVFK  240
ISGAALAGSA PNSVDPNNID PKVAMLIARE VSLACNVGVE VAIVVGGRNF FCGDTWVTST  300
GLDRCTAYQI GMMATVMNSI LLQSALEKLG VQTRVQSAFS MPEVAEPYSR QRAIRHLEKG  360
RVVIFGGIGA GTGNPLFSTD TAAALRASEI HADAVLKGTN VDGIYVCDSR NNSIAAEHIS  420
FRELASRGTF PMDMMAVTFC EENGIPVGIF NLHEPGNISR ALCGERVGIL IDQTGPVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-592264711239Uridylate kinase
3ek5_B1e-592264711239Uridylate kinase
3ek5_C1e-592264711239Uridylate kinase
3ek5_D1e-592264711239Uridylate kinase
3ek5_E1e-592264711239Uridylate kinase
3ek5_F1e-592264711239Uridylate kinase
3ek6_A1e-592264711239Uridylate kinase
3ek6_B1e-592264711239Uridylate kinase
3ek6_C1e-592264711239Uridylate kinase
3ek6_D1e-592264711239Uridylate kinase
3ek6_E1e-592264711239Uridylate kinase
3ek6_F1e-592264711239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101478.10.0uncharacterized protein LOC105179524
TrEMBLA0A4D8YX160.0A0A4D8YX16_SALSN; Uridylate kinase
STRINGMigut.L01743.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein