PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101387.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | Trihelix | ||||||||
Protein Properties | Length: 305aa MW: 34999.4 Da PI: 6.5519 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.4 | 1.4e-16 | 25 | 115 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f++le XP_011101387.1 25 CWTEEATSTLVDAWGRRYLELNRGNLRQKDWQEVADVVnarhgHTKKTRRTDVQCKNRIDTLKKKYKTEKAKISDSNGTLTSSWPFFSRLE 115 8**************************************9888888999**********************99999888899******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.2E-26 | 23 | 116 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDDLVESSTP QGHPPSRQVP SREDCWTEEA TSTLVDAWGR RYLELNRGNL RQKDWQEVAD 60 VVNARHGHTK KTRRTDVQCK NRIDTLKKKY KTEKAKISDS NGTLTSSWPF FSRLEFLIGS 120 NFNKHQSKLT SSAMPLASSQ STQPLSLPSP PMAVPLPYRK PLPSAMVMPV ILPQKRPTPS 180 PPVDESYFRK NYSVAAEDET EEDDGYLEGE EAEGSEDRAP EEEEVGEEGM RRLAKAIERF 240 GEIFEKVEGM KQRQMVELEK QRMQFAKDLE VQRMQLFMDT QVQLEKIKQA KRSRSSDDWR 300 MKSSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101387.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020547001.1 | 0.0 | trihelix transcription factor ASIL1 isoform X2 | ||||
Swissprot | Q9LJG8 | 8e-37 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2G9HQL7 | 1e-149 | A0A2G9HQL7_9LAMI; Transcription factor GT-2 | ||||
STRING | Migut.M01037.1.p | 1e-142 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 2e-57 | sequence-specific DNA binding transcription factors |