PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101291.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 351aa    MW: 39975.5 Da    PI: 6.0543
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
   XP_011101291.1 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.25.2e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE++l++ +++ lG++ W+ Ia  ++ gRt++++k++w++
   XP_011101291.1  67 RGMFSQEEEDLIIALHEALGNR-WAQIAVQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-24664IPR009057Homeodomain-like
PROSITE profilePS5129423.932965IPR017930Myb domain
SuperFamilySSF466891.24E-2812108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002499.8E-151461IPR001005SANT/Myb domain
CDDcd001671.95E-101761No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2565117IPR009057Homeodomain-like
SMARTSM007175.1E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129418.94266116IPR017930Myb domain
PfamPF002492.0E-1367110IPR001005SANT/Myb domain
CDDcd001673.67E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRHSCCVTQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDLIIA LHEALGNRWA QIAVQLPGRT DNEIKNFWNS SLKKKLIKQG  120
IDPNTHKPVT ETQVIKDEKH CRDSKPPHVL QPKGLPYLEA STQTEQQRCH FGSAICTDAG  180
ANFLSKQAYE PMFLSEFQES VDPNGFHPNI FLSHLRPYDP INPSCAFNSL PNLTNFDHQN  240
VAENDYSDSS ASRMSAYLMN EVKESSSNSS NVNSQTKNDL IVNCGTFSWD SENKLESMFS  300
FQFSGIESEE RKQSPWQEAD RQSSGEFSDY QQFTSLSQEL SAANLDAFQQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101291.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101291.10.0transcription factor MYB86
TrEMBLA0A438EZ101e-143A0A438EZ10_VITVI; Transcription factor MYB86
TrEMBLA0A438KB091e-145A0A438KB09_VITVI; Transcription factor MYB86
STRINGcassava4.1_033233m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-80myb domain protein 86