PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 874aa MW: 100488 Da PI: 6.638 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.2 | 5.1e-27 | 68 | 154 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ vGFsvrk+ ++sk +g++++r+f+Cs++g+r+++k++ ++ +++r+etrtgC a+++v+++ +gk+ vt++e eHnHe XP_011101183.1 68 RFYNKYAELVGFSVRKDWVNRSKVHGRVMSRKFTCSRQGHRKKDKRD-VNVKKHRKETRTGCLAHMVVTRQPHGKYLVTQFEAEHNHE 154 5*******************************************999.999************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-24 | 68 | 154 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.1E-20 | 281 | 372 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.248 | 561 | 597 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.8E-4 | 570 | 596 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.7E-6 | 572 | 599 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 874 aa Download sequence Send to blast |
MDVDEGDVLV THDEHMDVRM SNNLDLNVEH ECRSPKSSNP KGVHSSCSSK HEVLKIGTEF 60 ESDEQAYRFY NKYAELVGFS VRKDWVNRSK VHGRVMSRKF TCSRQGHRKK DKRDVNVKKH 120 RKETRTGCLA HMVVTRQPHG KYLVTQFEAE HNHEDVNLTK AQKLLESPLF GKGNSTEFSE 180 TDSMKNKEIH SNLSFQLLGI RFCPPDNFDD LQVSDEVFLS SGRTRDMKEG DAARLMYYFQ 240 RQHFENPSFF YSVQLDIDDK VSNIFWADDN MIVEYGHFGD VVCLDTSCAR NANSRPFVQF 300 VGLNNHRQAV TFGAAFLYDD SVNSFKWLVR TFVEAMSGKK PKFILSDQDA TVVQAIHAVL 360 PETSHCICAW QMYLIALKHL RHVVNEYESF TGDFRNCIFG HEQEEDFIQA WDSMLEKHGL 420 RHNAWLRWMF REKEKWAVAY GRNTFFIERN GTHLVELMSD RLRSYLGPDI DMLQFFKHFE 480 SVVNEQRYRE LESTLDMGRQ APVLMANAVL LKYPSETYTP MAFKVFQREY EKCLNVVVNK 540 CGERDSRFDF KVKTYGKSRE FLVIYNSLDG TVSCNCMKFE HVGFLCSHAL KVLDHQNIKV 600 VPSYYILRRW TKDARILPVG ESDSYPEDDN RKIVATRYKD LCRNIIKISA RAAESDTAFE 660 FAARQLNEVM QGVERILHFN TFEEAKGTCA SDNELADADL DRNDFEGQGV DVLKGTTETE 720 NMVPNKDQLN HCDDPIPGVS GGLAVRPSPP ETVLSVACGP STYISSPSPT PSLSPLTQGL 780 YTVEANHMVQ SMYQTSNLAI NQQSNPNMYE SPNFYSNQHH SPSHAQFLQD SLIRNQFQDP 840 MSNGTQMKQV MDDSQHTHSS SFMHYNHRYR AAGV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101183.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101183.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_011101184.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2G9H337 | 0.0 | A0A2G9H337_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F01137.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 2e-96 | FAR1 family protein |