PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32367.8 Da PI: 9.5633 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+t Ed ll ++++q+G g+W++ +++ g+ R++k+c++rw +yl XP_011101013.1 14 RGPWSTKEDTLLSNYIQQHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 8.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l XP_011101013.1 67 RGNISEDEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.05 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.2E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.75E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.584 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.40E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGRSPCCSKV GLRRGPWSTK EDTLLSNYIQ QHGEGQWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNI SEDEEDLIVR LHGLLGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKLKTAG 120 IHPKPHKDLP KPTRNKKPAA ASGGGKKKKK QKKTEKLTTA SGAEDIGNND RNGSEENIIS 180 NDPPKTKVYL PKPIRVSSVF PRTSSYDSLV SGSSSTEGGS VGAEKAPEVA SYVPVPWPPL 240 FEIEDADYGM CDGGDDFLGV GCILPVVHQQ SDSISDEVNM WEKVYDEYLQ LL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 150 | GKKKKKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101013.1 | 0.0 | transcription factor MYB6-like isoform X1 | ||||
Swissprot | Q38850 | 2e-67 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A2G9G735 | 1e-140 | A0A2G9G735_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.O00736.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 6e-67 | myb domain protein 5 |
Publications ? help Back to Top | |||
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