PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011101010.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Dof

Protein Properties

Length: 313aa MW: 33850.2 Da PI: 8.6562

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011101010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	32	93	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss XP_011101010.1 32 REQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNIPVGGGSRKNKKSSS 93 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	25	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.9E-34	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MASVVKPMEE IVTANTTCPK SSLERKIGRP QREQALNCPR CNSTNTKFCY YNNYSLSQPR 60 YFCKTCRRYW TAGGSLRNIP VGGGSRKNKK SSSTSTTTSS SSFTAPSPSP ANYTSKKLPD 120 LIIPQHQNPK NSAHDTQDLD LGLISSTAND FKAINELIQV PNFEASKDLQ NPCSSSSSDH 180 HHHHHHLSAL ELLSGITRTG STRILNSFPV PIPNSTNHDP NAVNYSSSSS GFSSLTEFNK 240 PPLSFSIDGL GSSSNYGSFV HGVDQESSGK LLFPFQSLKQ VSNSTNDGGE SRDQHGDAGS 300 GYWPNGVIGG GSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011101010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101010.1	0.0	dof zinc finger protein DOF1.8-like isoform X3
TrEMBL	A0A068UV02	4e-91	A0A068UV02_COFCA; Uncharacterized protein
STRING	VIT_02s0025g02250.t01	7e-85	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-40	Dof family protein