PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100952.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 362aa    MW: 39402.7 Da    PI: 6.5091
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.51.1e-19281315135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+tkTp+WR gp g+ktLCnaCG++y++ +l
  XP_011100952.1 281 CSHCGVTKTPQWRAGPLGSKTLCNACGVRYKSGRL 315
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.215275311IPR000679Zinc finger, GATA-type
SMARTSM004014.0E-17275329IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.04E-15276338No hitNo description
Gene3DG3DSA:3.30.50.104.4E-15279313IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.58E-16280328No hitNo description
PROSITE patternPS003440281306IPR000679Zinc finger, GATA-type
PfamPF003201.9E-17281315IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLYPTHHHPF LFSFNPFSHS SLSSHPLSSS LQLQGMECVQ GAWVSGFGSE MTPKTVAFMD  60
DFFAGPSAGA SGEDLFVDQL LDFSNDFSET EEQTQQVQEP EENEQDKKKT CSVSQEQQSP  120
PENSAISAKG DFGSLPESEL SVPAEGLESL EWLSHFVEDS FSDYSLTGKL PPKPAEKRPE  180
PENTVQVQPC FTTPIQTKAR TKRARTGVRV WPVLSPSFAE SSTSSSSSTS STTSLSPQNP  240
WAVQSQTGES FLGKPLDKKH RKKPADASAG SGGGAGQPRR CSHCGVTKTP QWRAGPLGSK  300
TLCNACGVRY KSGRLLPEYR PACSPTFSSE LHSNNHRKVL EMRRKKEVET EAAGLAPPVQ  360
SF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.10.0GATA transcription factor 5-like
SwissprotQ9FH571e-70GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2G9HGJ91e-170A0A2G9HGJ9_9LAMI; GATA transcription factor
STRINGMigut.L00033.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-68GATA transcription factor 5