PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100828.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 502aa    MW: 56900.3 Da    PI: 5.2843
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS233.11.3e-711354984374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets.eknsseelaalklfsevsPilkfshlt 97 
                      Ll++Ae +s+++  +a++lL  l   as ++ p++R+++ f++ L++r+  +  +     ++ e + e+  ++  aa  +  ++ P+ +++h+t
  XP_011100828.1 135 CLLDAAEKFSNQQYDEAEKLLIFL-LSASHADHPIERVVTWFVRDLQERIDMENGKFDLEKEVVEVDvEQALADLKAAIFTSEQLLPFTQITHFT 228
                     5999***************99876.5688999******************9844433333333333303446666667677899*********** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     a q+Il++++++e++H+iD++ + G +W+ + ++La+R++ p  +l+iT+v       k+++ee  e L++fAe+++vp+ f++ v +++++++ 
  XP_011100828.1 229 AIQTILDSLASAEKIHVIDIGTKLGSHWMIIVHSLANRKNFPVeQLKITVVCT----PKDNVEERVEMLSSFAESMNVPLIFKI-VNSEMHEFKQ 318
                     **************************************976555*********....899***********************9.799******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     ++++++ gE++aV + + l  l +++ ++e     ++  vk+l+P+++vv e ea+  ++ F+ rf eal  +sa+fd+le  l ++++ r  +E
  XP_011100828.1 319 DQFELEAGEVVAVYMEFCLTALAASPNNIEA----LIGWVKNLNPQLMVVNEIEANVCASAFVPRFHEALFLCSAMFDCLEDCLEQDNQCREIIE 409
                     **********************977777777....************************************************************ PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++ i+n  + e + ++ r+++ + Wre + ++G  +++ls+  ++qa+ l+r+ + ++  ++  + ++++lgW++ pL svSaW+
  XP_011100828.1 410 KVYFQEIIKNSAMSEDDGSFRRCRKINFWREYFAKFGIVEMELSQPSMDQASFLVRESPcWKSCTLSMNGKCMLLGWNEIPLRSVSAWK 498
                     ***********************************************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.958106477IPR005202Transcription factor GRAS
PfamPF035144.4E-69135498IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAPRSDEAIQ DNELPLTLSY DAEAKKGDPC NLQAPFEILI KYGSQMKRLR SGKRCGLRQP  60
KHFETARRDC QISETGGSAS NCQVLSAVSI MRMATTELIK SRSRITSDSS TLGNASAFDS  120
GVTHKHAKHL KHVLCLLDAA EKFSNQQYDE AEKLLIFLLS ASHADHPIER VVTWFVRDLQ  180
ERIDMENGKF DLEKEVVEVD VEQALADLKA AIFTSEQLLP FTQITHFTAI QTILDSLASA  240
EKIHVIDIGT KLGSHWMIIV HSLANRKNFP VEQLKITVVC TPKDNVEERV EMLSSFAESM  300
NVPLIFKIVN SEMHEFKQDQ FELEAGEVVA VYMEFCLTAL AASPNNIEAL IGWVKNLNPQ  360
LMVVNEIEAN VCASAFVPRF HEALFLCSAM FDCLEDCLEQ DNQCREIIEK VYFQEIIKNS  420
AMSEDDGSFR RCRKINFWRE YFAKFGIVEM ELSQPSMDQA SFLVRESPCW KSCTLSMNGK  480
CMLLGWNEIP LRSVSAWKFH KD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2716049832375GRAS family transcription factor containing protein, expressed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100828.10.0DELLA protein RGL1-like
TrEMBLA0A2G9I0G71e-175A0A2G9I0G7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2044223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-41RGA-like 1