PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 502aa MW: 56900.3 Da PI: 5.2843 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 233.1 | 1.3e-71 | 135 | 498 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets.eknsseelaalklfsevsPilkfshlt 97 Ll++Ae +s+++ +a++lL l as ++ p++R+++ f++ L++r+ + + ++ e + e+ ++ aa + ++ P+ +++h+t XP_011100828.1 135 CLLDAAEKFSNQQYDEAEKLLIFL-LSASHADHPIERVVTWFVRDLQERIDMENGKFDLEKEVVEVDvEQALADLKAAIFTSEQLLPFTQITHFT 228 5999***************99876.5688999******************9844433333333333303446666667677899*********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 a q+Il++++++e++H+iD++ + G +W+ + ++La+R++ p +l+iT+v k+++ee e L++fAe+++vp+ f++ v +++++++ XP_011100828.1 229 AIQTILDSLASAEKIHVIDIGTKLGSHWMIIVHSLANRKNFPVeQLKITVVCT----PKDNVEERVEMLSSFAESMNVPLIFKI-VNSEMHEFKQ 318 **************************************976555*********....899***********************9.799******* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 ++++++ gE++aV + + l l +++ ++e ++ vk+l+P+++vv e ea+ ++ F+ rf eal +sa+fd+le l ++++ r +E XP_011100828.1 319 DQFELEAGEVVAVYMEFCLTALAASPNNIEA----LIGWVKNLNPQLMVVNEIEANVCASAFVPRFHEALFLCSAMFDCLEDCLEQDNQCREIIE 409 **********************977777777....************************************************************ PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++ i+n + e + ++ r+++ + Wre + ++G +++ls+ ++qa+ l+r+ + ++ ++ + ++++lgW++ pL svSaW+ XP_011100828.1 410 KVYFQEIIKNSAMSEDDGSFRRCRKINFWREYFAKFGIVEMELSQPSMDQASFLVRESPcWKSCTLSMNGKCMLLGWNEIPLRSVSAWK 498 ***********************************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.958 | 106 | 477 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-69 | 135 | 498 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MAPRSDEAIQ DNELPLTLSY DAEAKKGDPC NLQAPFEILI KYGSQMKRLR SGKRCGLRQP 60 KHFETARRDC QISETGGSAS NCQVLSAVSI MRMATTELIK SRSRITSDSS TLGNASAFDS 120 GVTHKHAKHL KHVLCLLDAA EKFSNQQYDE AEKLLIFLLS ASHADHPIER VVTWFVRDLQ 180 ERIDMENGKF DLEKEVVEVD VEQALADLKA AIFTSEQLLP FTQITHFTAI QTILDSLASA 240 EKIHVIDIGT KLGSHWMIIV HSLANRKNFP VEQLKITVVC TPKDNVEERV EMLSSFAESM 300 NVPLIFKIVN SEMHEFKQDQ FELEAGEVVA VYMEFCLTAL AASPNNIEAL IGWVKNLNPQ 360 LMVVNEIEAN VCASAFVPRF HEALFLCSAM FDCLEDCLEQ DNQCREIIEK VYFQEIIKNS 420 AMSEDDGSFR RCRKINFWRE YFAKFGIVEM ELSQPSMDQA SFLVRESPCW KSCTLSMNGK 480 CMLLGWNEIP LRSVSAWKFH KD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-27 | 160 | 498 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100828.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100828.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2G9I0G7 | 1e-175 | A0A2G9I0G7_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA20442 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 9e-41 | RGA-like 1 |