PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100812.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARR-B
Protein Properties Length: 673aa    MW: 74330.5 Da    PI: 6.3753
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57.1e-29213266155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  XP_011100812.1 213 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
                     79*******************.********************************8 PP
2Response_reg75.51.9e-25331411109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l++  y ev+++  +e al+ l++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  G
  XP_011100812.1  33 VLVVDDDPTCLRILEKMLKNCLY-EVTTCNRAEVALKFLRDNKngYDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKNVVMKGVTHG 125
                     89*********************.***************888889**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l +
  XP_011100812.1 126 ACDYLIKPVRMEALKN 141
                     ***********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.6E-18513670IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.3E-4330177No hitNo description
SuperFamilySSF521723.7E-3530155IPR011006CheY-like superfamily
SMARTSM004485.7E-3031143IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.04432147IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2233141IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.70E-2734146No hitNo description
SuperFamilySSF466893.23E-20210270IPR009057Homeodomain-like
PROSITE profilePS5129410.611210269IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-30212271IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-25213266IPR006447Myb domain, plants
PfamPF002491.1E-7215265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MDLGVKPVSF TSSSASWKSA DGVPDQFPAG LRVLVVDDDP TCLRILEKML KNCLYEVTTC  60
NRAEVALKFL RDNKNGYDIV ISDVHMPDMD GFKLLEHVGL EMDLPVIMMS ADDSKNVVMK  120
GVTHGACDYL IKPVRMEALK NIWQHVVRKK KHEWKEKDFE QSGSVDEVER QHKPPEDVDY  180
SSSANEGNWK NSKKRKDEED EAEERDDSST LKKPRVVWSV ELHQQFVTAV NQLGIDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQNG LGSSFMGPPD APFGPMSSLS  300
GVDLQALAAS GQLPPQSLAT IQAAALGRAA TKSAIPVPLI DQRNIFSFEN PKLRFLDGQQ  360
QQNNNSKQVS LLHGIPTNMD SKQLATLHQS AQSFGSMNMH VHSQASQSNS LLTQMVQPPS  420
RAQILNEING SHALNLPSSA GQPVLSQAVP NAVLGQNGIE NVRRPAFTSV SQPSTVVDFS  480
RSQSTEFPEN SFSLVSNSGI SNLTSKLQDE VNSEMKASRG FVPNYDVFND INQNRTQDWR  540
LQDVRSTFEA QQHSNGRGSL DVSSSVLIQQ QFSSNQKSGQ NRIPPVRKAA FSVADGLGNT  600
SNIGQQLSSS LVDNPSRIKA ERLPDMGFQN GLFSEHFGQE DLMTAILKQQ QGGMEPIENE  660
FGFDGYHLDN LPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-21212272464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100812.10.0two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2G9HNZ30.0A0A2G9HNZ3_9LAMI; Two-component response regulator
STRINGEOY066390.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]