PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100810.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 163aa    MW: 17487.6 Da    PI: 10.4536
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.7e-193468135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  XP_011100810.1 34 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 68
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-142881IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2022864IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-122968No hitNo description
CDDcd002024.64E-123368No hitNo description
Gene3DG3DSA:3.30.50.101.1E-153368IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
PfamPF003201.0E-163468IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MMDLSDKGSE CEEMSSQTPT PDRVSSDGSN VKTCVDCGTS KTPLWRGGPA GPKSLCNACG  60
IRSRKKRRAL MGVAKEEKKT KKSTSGKNTS HHQSNSSSSN SSSSSSGDST GKIGDSFKKK  120
LWAFGRDVAL QRPRSNTTRR RKLGEEEQAA FLLMALSCGS VYA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100810.11e-116GATA transcription factor 15-like
TrEMBLA0A4D9A7J84e-86A0A4D9A7J8_SALSN; Uncharacterized protein
STRINGMigut.G00106.1.p9e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-39GATA transcription factor 15