PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100788.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

CAMTA

Protein Properties

Length: 929aa MW: 105167 Da PI: 7.2512

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.9	6.6e-52	30	147	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e k+rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf XP_011100788.1 30 MEEaKARWLRPNEIHAILCNHKYFTVYVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFV 124 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ XP_011100788.1 125 RRCYWLLDKSLEHIVLVHYRETQ 147 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.333	26	152	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.5E-77	29	147	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.0E-46	32	145	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.22E-9	382	467	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.30E-13	566	676	No hit	No description
SuperFamily	SSF48403	3.42E-16	567	679	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-15	567	679	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.345	575	649	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.434	617	649	IPR002110	Ankyrin repeat
SMART	SM00248	5.1E-6	617	646	IPR002110	Ankyrin repeat
Pfam	PF00023	9.2E-5	618	648	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.72E-8	724	831	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.163	765	791	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	14	780	802	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	784	810	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	803	825	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.091	804	828	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.001	805	825	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	35	883	905	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.114	885	913	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 929 aa Download sequence Send to blast
MENTGVRGRF VGSEIHGFRT LEDLDVGNMM EEAKARWLRP NEIHAILCNH KYFTVYVKPV 60 NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN 120 PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPVNSN SNSAGSDLSA TWPMSEESDS 180 AVDRVYYGST GSYLECHDSV TVKHHEQRLY EINTLEWDEL LVPDDPHRLI TRQQGTTAGF 240 ELQNQYQMNS YRINDDAPSN NKVSPECSTN SFSEPVAGRS SINYTSPNNM SYQTVEQDTI 300 VNSETMVSGL MPSGGAGSLY NLGKDGLQSQ DSFGRWVTHI IAESPESVDD HTLESSNLAG 360 HQSSTYPLMD SHDSSPLGPI FTITDVSPAW ALSTEETKIL VVGFFNEGQL PYSESKLYLA 420 CGDSLLPVDV VQAGVFRCLI PPQAPKLGNL YITFDGHKPI SQVLTFEIRA PVQPGTVSFE 480 NKTDWEEFQL QMRLAHLLFS SSKGLSIYST KLSPTALKEA KAFAQKTSHI SDGWLHMAKV 540 IEDTKMSFPQ AKDKLFELTL QNRLQEWLLE KVVAGCKISE RDEQGLGVIH LCSILGYTWA 600 VYPYSWSGLS LDYRDKFGWT ALHWAAYYGR EKMVATLLSA GAKPNLVTDP TSQNPGGCSA 660 HDLASKNGYD GLAAYLAEKA LVAQFDDMTL AGNVSGSLQT TTNETVNPGN FSEDELYLKD 720 TLAAYRTAAD AAARIQTAFR EHSLKIRTKV VESSNPELEA RNIVAAMKIQ HAFRNYETRK 780 KIVAAARIQH RFRTWKIRKE FLNMRRQAIK IQAMFRGFQV RRQYRKIVWS VGVLEKAILR 840 WRLKRKGFRG LQVQPAETPR EPNEESDVEE DFFQASRKQA EERVEQSVVR VQAMFRSKQA 900 QEAYRRMKLE HNKAKLEYEG LLHPDLQMG

Sequence ? help Back to Top

Protein Sequence Length: 929 aa Download sequence Send to blast

MENTGVRGRF VGSEIHGFRT LEDLDVGNMM EEAKARWLRP NEIHAILCNH KYFTVYVKPV  60
NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN  120
PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPVNSN SNSAGSDLSA TWPMSEESDS  180
AVDRVYYGST GSYLECHDSV TVKHHEQRLY EINTLEWDEL LVPDDPHRLI TRQQGTTAGF  240
ELQNQYQMNS YRINDDAPSN NKVSPECSTN SFSEPVAGRS SINYTSPNNM SYQTVEQDTI  300
VNSETMVSGL MPSGGAGSLY NLGKDGLQSQ DSFGRWVTHI IAESPESVDD HTLESSNLAG  360
HQSSTYPLMD SHDSSPLGPI FTITDVSPAW ALSTEETKIL VVGFFNEGQL PYSESKLYLA  420
CGDSLLPVDV VQAGVFRCLI PPQAPKLGNL YITFDGHKPI SQVLTFEIRA PVQPGTVSFE  480
NKTDWEEFQL QMRLAHLLFS SSKGLSIYST KLSPTALKEA KAFAQKTSHI SDGWLHMAKV  540
IEDTKMSFPQ AKDKLFELTL QNRLQEWLLE KVVAGCKISE RDEQGLGVIH LCSILGYTWA  600
VYPYSWSGLS LDYRDKFGWT ALHWAAYYGR EKMVATLLSA GAKPNLVTDP TSQNPGGCSA  660
HDLASKNGYD GLAAYLAEKA LVAQFDDMTL AGNVSGSLQT TTNETVNPGN FSEDELYLKD  720
TLAAYRTAAD AAARIQTAFR EHSLKIRTKV VESSNPELEA RNIVAAMKIQ HAFRNYETRK  780
KIVAAARIQH RFRTWKIRKE FLNMRRQAIK IQAMFRGFQV RRQYRKIVWS VGVLEKAILR  840
WRLKRKGFRG LQVQPAETPR EPNEESDVEE DFFQASRKQA EERVEQSVVR VQAMFRSKQA  900
QEAYRRMKLE HNKAKLEYEG LLHPDLQMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100788.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100788.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_011100789.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A022RYH3	0.0	A0A022RYH3_ERYGU; Uncharacterized protein
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]