PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 559aa MW: 62859.8 Da PI: 4.9657 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 289.6 | 8.4e-89 | 184 | 554 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkf 93 lv+ +l+cA+ v +++ e+a++lL + ++sp g+p+qRl++yfteAL +++ r++ ++ + + e++ + ++ + l +f++ P+ ++ XP_011100773.1 184 LVQNVLACADKVGEKQYERARNLLLECDRMSSPGGTPVQRLVFYFTEALYEKIDRETGRITPKGlgKKIEDPLQALKTPDMTLITFHKKLPLSQI 278 57899**************************************************666655443133333333335555555556********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 + ++ qa+++ v+++++vH iD++i +G+Q L+qaLa+R+e+p +l+iT+v+ +sk ++eetg++L++fA++l+++f+fnv++++++ XP_011100773.1 279 TKFAGIQAVVDDVAEARKVHFIDLEIRKGIQCTILMQALAARSENPIeHLKITAVAI---KSKASIEETGRQLTSFAQSLDLKFSFNVVMVEDIF 370 *******************************************66545********9...589******************************** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 l+ + ++++++Ea+aV ++ l ++ ++ +le+ +++++ks++P ++vv+e ea++ns+ F+erf+eal +y a+f+s+++ l +++++r XP_011100773.1 371 GLKENLFDLDEDEAIAVYAAYTLTNMIGQPDQLEH----LIRIIKSMNPCMMVVTEVEANCNSPIFVERFVEALFFYGACFESMAECLKNDEKHR 461 ***************************88888888....******************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 Er +++ +i+n+va+eg++r+ rh + Wr+ ++++GF++ +ls +a+ qa+l+++++ + y+ + + +sl++gWk+ p+ s+SaW+ XP_011100773.1 462 CIAERTCFSSAIRNIVAAEGDDRKIRHVGISVWRAFFTHFGFEETELSMSAVYQANLVVKNFTsGSSYTFDIDGKSLIIGWKGAPVSSLSAWK 554 ***************************************************************8888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.423 | 158 | 533 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-86 | 184 | 554 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MLSNISQTEQ FHSCGGLDEY DLENLEKKSG FCEGEKWGEL DMGMDSFGCG VEFFGDCSAQ 60 IDQQQQQFAD FGSTCADEFL KTVRVDSQKS ELIEPEKKGA HLFPSASFEI LNKYRSRCRR 120 LNGEYMNIPR YDAERKVSCG MSVVTIIQLA AEKFIQSNES SLLSHPYLSS MLCRSEEDSQ 180 GVQLVQNVLA CADKVGEKQY ERARNLLLEC DRMSSPGGTP VQRLVFYFTE ALYEKIDRET 240 GRITPKGLGK KIEDPLQALK TPDMTLITFH KKLPLSQITK FAGIQAVVDD VAEARKVHFI 300 DLEIRKGIQC TILMQALAAR SENPIEHLKI TAVAIKSKAS IEETGRQLTS FAQSLDLKFS 360 FNVVMVEDIF GLKENLFDLD EDEAIAVYAA YTLTNMIGQP DQLEHLIRII KSMNPCMMVV 420 TEVEANCNSP IFVERFVEAL FFYGACFESM AECLKNDEKH RCIAERTCFS SAIRNIVAAE 480 GDDRKIRHVG ISVWRAFFTH FGFEETELSM SAVYQANLVV KNFTSGSSYT FDIDGKSLII 540 GWKGAPVSSL SAWKFQCPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-45 | 184 | 554 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100773.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100773.1 | 0.0 | scarecrow-like protein 18 | ||||
TrEMBL | A0A2G9H5S7 | 0.0 | A0A2G9H5S7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.G00048.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 7e-53 | RGA-like protein 3 |