PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100773.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 559aa    MW: 62859.8 Da    PI: 4.9657
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.68.4e-891845541374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkf 93 
                     lv+ +l+cA+ v +++ e+a++lL +   ++sp g+p+qRl++yfteAL +++ r++ ++  +   +  e++ +  ++  + l +f++  P+ ++
  XP_011100773.1 184 LVQNVLACADKVGEKQYERARNLLLECDRMSSPGGTPVQRLVFYFTEALYEKIDRETGRITPKGlgKKIEDPLQALKTPDMTLITFHKKLPLSQI 278
                     57899**************************************************666655443133333333335555555556********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     + ++  qa+++ v+++++vH iD++i +G+Q   L+qaLa+R+e+p  +l+iT+v+    +sk ++eetg++L++fA++l+++f+fnv++++++ 
  XP_011100773.1 279 TKFAGIQAVVDDVAEARKVHFIDLEIRKGIQCTILMQALAARSENPIeHLKITAVAI---KSKASIEETGRQLTSFAQSLDLKFSFNVVMVEDIF 370
                     *******************************************66545********9...589******************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      l+ + ++++++Ea+aV  ++ l ++  ++ +le+    +++++ks++P ++vv+e ea++ns+ F+erf+eal +y a+f+s+++ l +++++r
  XP_011100773.1 371 GLKENLFDLDEDEAIAVYAAYTLTNMIGQPDQLEH----LIRIIKSMNPCMMVVTEVEANCNSPIFVERFVEALFFYGACFESMAECLKNDEKHR 461
                     ***************************88888888....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        Er +++ +i+n+va+eg++r+ rh   + Wr+ ++++GF++ +ls +a+ qa+l+++++  +  y+ + + +sl++gWk+ p+ s+SaW+
  XP_011100773.1 462 CIAERTCFSSAIRNIVAAEGDDRKIRHVGISVWRAFFTHFGFEETELSMSAVYQANLVVKNFTsGSSYTFDIDGKSLIIGWKGAPVSSLSAWK 554
                     ***************************************************************8888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.423158533IPR005202Transcription factor GRAS
PfamPF035142.9E-86184554IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MLSNISQTEQ FHSCGGLDEY DLENLEKKSG FCEGEKWGEL DMGMDSFGCG VEFFGDCSAQ  60
IDQQQQQFAD FGSTCADEFL KTVRVDSQKS ELIEPEKKGA HLFPSASFEI LNKYRSRCRR  120
LNGEYMNIPR YDAERKVSCG MSVVTIIQLA AEKFIQSNES SLLSHPYLSS MLCRSEEDSQ  180
GVQLVQNVLA CADKVGEKQY ERARNLLLEC DRMSSPGGTP VQRLVFYFTE ALYEKIDRET  240
GRITPKGLGK KIEDPLQALK TPDMTLITFH KKLPLSQITK FAGIQAVVDD VAEARKVHFI  300
DLEIRKGIQC TILMQALAAR SENPIEHLKI TAVAIKSKAS IEETGRQLTS FAQSLDLKFS  360
FNVVMVEDIF GLKENLFDLD EDEAIAVYAA YTLTNMIGQP DQLEHLIRII KSMNPCMMVV  420
TEVEANCNSP IFVERFVEAL FFYGACFESM AECLKNDEKH RCIAERTCFS SAIRNIVAAE  480
GDDRKIRHVG ISVWRAFFTH FGFEETELSM SAVYQANLVV KNFTSGSSYT FDIDGKSLII  540
GWKGAPVSSL SAWKFQCPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-451845544375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100773.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100773.10.0scarecrow-like protein 18
TrEMBLA0A2G9H5S70.0A0A2G9H5S7_9LAMI; Uncharacterized protein
STRINGMigut.G00048.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.17e-53RGA-like protein 3