PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100677.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SBP

Protein Properties

Length: 1020aa MW: 114131 Da PI: 7.3662

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	179	256	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adl++ak+yhrrhkvC +h+ka+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_011100677.1 179 VCQVEECKADLTNAKDYHRRHKVCAMHAKATRALVGNIMQRFCQQCSRFHGLQEFDEGKRSCRRRLAGHNKRRRKTHP 256 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.2E-32	173	241	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.71	177	254	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-37	178	259	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.8E-29	180	253	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.8E-9	790	911	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.3E-8	802	920	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.11E-7	802	923	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1020 aa Download sequence Send to blast
METKFGGKLH HFYGPVVSDL KDVGKKSMEW DLNDWRWDGD LFMAAPLNTV TSDCRSRQLF 60 PVGSNISVNE GASLNTVPSD CRSRQLFQVG SNIRVNSGAS NCSLLWSEEV MGSEKEKRDL 120 EKRRRVFEVE NEQVNEEAGS LNLKLGGQVY PIVEGELDEL EGKSGKKTKV TGAPSSHAVC 180 QVEECKADLT NAKDYHRRHK VCAMHAKATR ALVGNIMQRF CQQCSRFHGL QEFDEGKRSC 240 RRRLAGHNKR RRKTHPDNLV NAATQSDEQG SNYLLISLLR ILSNIHSNNS DQTKDQDLLS 300 HLLRNLAPTG LTNEGNPARP LPVSEDLQNV ETSLATAVED LITPAEPGVT IPTTDLTQKR 360 MLTDKALGKV TYSEPTSQYA IQFPANASDS MKENTSDTTI GRNKLNNFDL NYVYDGSQDC 420 MDNLPDACAS EYLGNMSPAG PLWLYKDSQQ SSPPHNSGNS GSTSSHSPST SSGEAQSRTD 480 RIVFKLFGKD PNDFPLVLRK QILDWLSNSP TDMESYIRPG CIILTIYLRM DKSSWDKLHC 540 DLTSSLRRLV NSSSDSFWRT GWIYTRVQHR VTFVCNGEVV LDTPLPMKNH HSCRISSIKP 600 IAVTVSEGVQ FVVKGFNLSC STSRLLCTME GKYLVQENCA DMTGLADSFI KHDEIQSLSF 660 SCVIPNIVGR GFIEVEDHGL RSSFFPFIVA EEDVCSEICT LESILEDADE DINKLEVRNQ 720 ALDFIHEMGW LLHRSRLKFR LGDSSGDVDL FPFKRFRWLI EFAVDRDWCA VVKKLISILF 780 DGTVDLGQEN CNLVALLDIG LLHRAVRRNC RSMVEFLLNC NPGVNLEKTR SRQKQPDGGQ 840 YLFRPDSVGP GGLTPLHVAA SLDSRENVLD ALTEDPGSVG IKAWKSKRDS SGLTAHDHAC 900 MRGNYSYVLL VEKKLNKKSR NGHVLIDIPG RVIDSSKLGR TSKFVGLESE KRGGECRQCD 960 QKLGYGRRWR SSVRIYRPTM VSIVAIAAVC VCTALLFKSS PEVLYSFRPF RWELLDYGSQ

Sequence ? help Back to Top

Protein Sequence Length: 1020 aa Download sequence Send to blast

METKFGGKLH HFYGPVVSDL KDVGKKSMEW DLNDWRWDGD LFMAAPLNTV TSDCRSRQLF  60
PVGSNISVNE GASLNTVPSD CRSRQLFQVG SNIRVNSGAS NCSLLWSEEV MGSEKEKRDL  120
EKRRRVFEVE NEQVNEEAGS LNLKLGGQVY PIVEGELDEL EGKSGKKTKV TGAPSSHAVC  180
QVEECKADLT NAKDYHRRHK VCAMHAKATR ALVGNIMQRF CQQCSRFHGL QEFDEGKRSC  240
RRRLAGHNKR RRKTHPDNLV NAATQSDEQG SNYLLISLLR ILSNIHSNNS DQTKDQDLLS  300
HLLRNLAPTG LTNEGNPARP LPVSEDLQNV ETSLATAVED LITPAEPGVT IPTTDLTQKR  360
MLTDKALGKV TYSEPTSQYA IQFPANASDS MKENTSDTTI GRNKLNNFDL NYVYDGSQDC  420
MDNLPDACAS EYLGNMSPAG PLWLYKDSQQ SSPPHNSGNS GSTSSHSPST SSGEAQSRTD  480
RIVFKLFGKD PNDFPLVLRK QILDWLSNSP TDMESYIRPG CIILTIYLRM DKSSWDKLHC  540
DLTSSLRRLV NSSSDSFWRT GWIYTRVQHR VTFVCNGEVV LDTPLPMKNH HSCRISSIKP  600
IAVTVSEGVQ FVVKGFNLSC STSRLLCTME GKYLVQENCA DMTGLADSFI KHDEIQSLSF  660
SCVIPNIVGR GFIEVEDHGL RSSFFPFIVA EEDVCSEICT LESILEDADE DINKLEVRNQ  720
ALDFIHEMGW LLHRSRLKFR LGDSSGDVDL FPFKRFRWLI EFAVDRDWCA VVKKLISILF  780
DGTVDLGQEN CNLVALLDIG LLHRAVRRNC RSMVEFLLNC NPGVNLEKTR SRQKQPDGGQ  840
YLFRPDSVGP GGLTPLHVAA SLDSRENVLD ALTEDPGSVG IKAWKSKRDS SGLTAHDHAC  900
MRGNYSYVLL VEKKLNKKSR NGHVLIDIPG RVIDSSKLGR TSKFVGLESE KRGGECRQCD  960
QKLGYGRRWR SSVRIYRPTM VSIVAIAAVC VCTALLFKSS PEVLYSFRPF RWELLDYGSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	179	253	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	125	KRRRV
2	248	254	KRRRKTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100677.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100677.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_020555128.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A2G9I0L1	0.0	A0A2G9I0L1_9LAMI; Uncharacterized protein
STRING	Migut.G00007.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12