PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100624.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 546aa    MW: 60904.5 Da    PI: 6.4587
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.91.7e-1371775462374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L +cA avs+gdl  aq+l+++l++++s +g+p+qRl ay++e+L arl+ s+s++yk+l+ +e +   s e l+++++++ev+P++kf+h+
  XP_011100624.1 177 KRVLSACAMAVSNGDLLTAQWLISELRQIVSVSGEPVQRLGAYMLEGLVARLSASGSSIYKSLKFQEPA---SFELLSYMHILYEVCPYFKFGHM 268
                     6899****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ eervHiiDf+i+qG QW++L+ a+a+Rp+gpp++RiTg+++ +s   +   l+ +g+rL+k+Ae+++vpf+f+  +a +  ++
  XP_011100624.1 269 SANGAIAEAMKDEERVHIIDFQIGQGSQWIPLILAFAARPGGPPHIRITGIDDFRSIvaRGGGLSIVGRRLSKLAEAFKVPFQFHG-AAMSGCEV 362
                     *****************************************************888899999************************.89999*** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L ++pgEalaVn++++l++++desvs+e++rd++L++vk+l+Pkvv++veqe ++n++ F  rfleal+yy+a+fds++a+lpre++eri+
  XP_011100624.1 363 QVKNLGIRPGEALAVNFAFMLQHMPDESVSTENHRDRLLRMVKGLNPKVVTLVEQEFNTNTAAFYPRFLEALDYYTAMFDSIDATLPREHKERIN 457
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+re+vn++aceg+er+erhe l+kWr+rl++aGF+p+pls+ +++++k+ll+++ s+ yrvee++g+l+lgW++r Lv+ +aW+
  XP_011100624.1 458 VEQQCLAREVVNIIACEGKERVERHEPLGKWRSRLKMAGFSPYPLSSLVNATIKTLLENYCSK-YRVEERDGALYLGWMNRDLVASCAWK 546
                     *************************************************************88.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.526150527IPR005202Transcription factor GRAS
PfamPF035145.9E-135177546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQACQYHSRS GMTNTLCCRP IGKLENCSLQ PCQPINPHHL SYNNGSNGSN YPVHISQDRY  60
CTLESSSLSV NYTGHDSPST VSFSANESSL SQQESMSLCM DPHHSPDTNY GSPITGPRVT  120
EDVNELKHKL KELETVMLGP DLDSLEYFDD TLPSSIASAE IESWRDMMVV IPKGDLKRVL  180
SACAMAVSNG DLLTAQWLIS ELRQIVSVSG EPVQRLGAYM LEGLVARLSA SGSSIYKSLK  240
FQEPASFELL SYMHILYEVC PYFKFGHMSA NGAIAEAMKD EERVHIIDFQ IGQGSQWIPL  300
ILAFAARPGG PPHIRITGID DFRSIVARGG GLSIVGRRLS KLAEAFKVPF QFHGAAMSGC  360
EVQVKNLGIR PGEALAVNFA FMLQHMPDES VSTENHRDRL LRMVKGLNPK VVTLVEQEFN  420
TNTAAFYPRF LEALDYYTAM FDSIDATLPR EHKERINVEQ QCLAREVVNI IACEGKERVE  480
RHEPLGKWRS RLKMAGFSPY PLSSLVNATI KTLLENYCSK YRVEERDGAL YLGWMNRDLV  540
ASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6118354526378Protein SCARECROW
5b3h_A3e-6118354525377Protein SCARECROW
5b3h_D3e-6118354525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100624.10.0scarecrow-like protein 21
RefseqXP_011100625.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2G3BZY50.0A0A2G3BZY5_CAPCH; Uncharacterized protein
STRINGXP_009761823.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]