PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100553.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 415aa    MW: 45166.2 Da    PI: 5.3035
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.6e-07544639
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    C+ ++e++ +++C+++   lC +C  + H+       H++
  XP_011100553.1  5 CDFCGEQRSIIYCRSDAASLCLSCDRNVHSAnalskrHSR 44
                    *****************************65667777765 PP
2zf-B_box22.42.5e-074688440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +C++++++++ + C + ++ lC++C   +H g      H+++
  XP_011100553.1 46 LVCERCNSQPAFIRCIEEKVSLCQNCDWVGHAGsnispgHKRQ 88
                    68*****************************888888888765 PP
3CCT621.9e-21358401144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ a++RYkeK+k RkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  XP_011100553.1 358 RNDAVMRYKEKKKARKFEKKVRYASRKARADVRRRVKGRFVKAG 401
                     999**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.556147IPR000315B-box-type zinc finger
CDDcd000213.12E-6447No hitNo description
SMARTSM003365.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.834390IPR000315B-box-type zinc finger
CDDcd000210.001134778No hitNo description
SMARTSM003361.44890IPR000315B-box-type zinc finger
PfamPF062034.7E-16358400IPR010402CCT domain
PROSITE profilePS5101715.309358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGYLCDFCGE QRSIIYCRSD AASLCLSCDR NVHSANALSK RHSRTLVCER CNSQPAFIRC  60
IEEKVSLCQN CDWVGHAGSN ISPGHKRQAV NCYSGCPSAA ELSSIWSFLL DFPSVGDSTC  120
EQGMGSMSIT DNRSMDCQGP HGKNNVQDAS FLGEASDVHN VEMDKSTVWM ESLNHLHDPR  180
QQNVDQAAGS TSSAVPKVIL PGAKEKEAAV CEDDDFYDVF NMDEVDLSIE NYEELFGAAL  240
DNPQLFGNDS IEGIFGTKDM SASNCQGAYA AEGSSIGGVN VMQPACSNAA SADSVLSCKT  300
DPNLYFARQA HSSLSFSGLT GESSAGDYQD CGVSSKPMMG EPPWYPPGTE SSMPPTSRND  360
AVMRYKEKKK ARKFEKKVRY ASRKARADVR RRVKGRFVKA GDAYDYDPLS PSRSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100553.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100551.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100552.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100553.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-141COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A068LFB80.0A0A068LFB8_TECGR; CONSTANS-like protein 9
STRINGMigut.M00064.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-121B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]