PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 411aa MW: 44120.5 Da PI: 8.4452 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.9 | 1.3e-11 | 21 | 46 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtGtC yG++C+F+H+ XP_011100472.1 21 PGEPDCLYYLRTGTCGYGSNCRFNHP 46 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.4 | 8.8e-12 | 68 | 92 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f+++tGtCkyG++Ck++H++ XP_011100472.1 68 KPDCGFYLKTGTCKYGSTCKYHHPK 92 689********************96 PP | |||||||
3 | zf-CCCH | 32.4 | 1.6e-10 | 124 | 146 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG CkF+H++ XP_011100472.1 124 ACPYYMQTGLCKYGYACKFHHPQ 146 7********************97 PP | |||||||
4 | zf-CCCH | 37.2 | 4.8e-12 | 248 | 272 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++ G CkyG++CkF+H+ XP_011100472.1 248 DQPECQYYMNHGSCKYGSNCKFHHP 272 689*********************8 PP | |||||||
5 | zf-CCCH | 33.7 | 6e-11 | 295 | 318 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C++++ +G CkyG++CkF H+ XP_011100472.1 295 LPVCSYYSLYGLCKYGPTCKFDHP 318 589********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.464 | 20 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-6 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-9 | 22 | 46 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 25 | 48 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-5 | 26 | 45 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.746 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 66 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 70 | 93 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 71 | 92 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-7 | 118 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.751 | 119 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-8 | 123 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 123 | 145 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-5 | 246 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.042 | 246 | 274 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 248 | 272 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-7 | 248 | 276 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 252 | 272 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.014 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-8 | 295 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 297 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MEGSDDNGGV GDDRGLFPDR PGEPDCLYYL RTGTCGYGSN CRFNHPSNAG GQVHGVKNTS 60 ELPERAGKPD CGFYLKTGTC KYGSTCKYHH PKDRQGDNRP KDSKPDSLIL LNILGLPMRQ 120 DGKACPYYMQ TGLCKYGYAC KFHHPQPTSA ANVLPVVGPV YGSGASAVAP SSGAPSVGEI 180 PAPTLPKATY FSSSLLHVPQ SYMPIILSPS QGWNTYTGSV SPLSVTSVLT APASDGQLPV 240 PYLPQRPDQP ECQYYMNHGS CKYGSNCKFH HPIKKITQLP PSSLGPLGLP LRPGLPVCSY 300 YSLYGLCKYG PTCKFDHPLD GYAYAYSLSV PPLSAPYSPS SPYQSTSSLA PSSETSPSKP 360 SKLNDWIKKG VPASNKSRHS NTKSGRDSPD VSDSQPRSSK TSSEIMQNES D |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100472.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100471.1 | 0.0 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
TrEMBL | A0A4D8XVR1 | 0.0 | A0A4D8XVR1_SALSN; Uncharacterized protein | ||||
STRING | Migut.H01247.1.p | 1e-157 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-73 | C3H family protein |