PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 47504.3 Da PI: 8.7895 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 53 | 78 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtGtC yG++C+F+H+ XP_011100471.1 53 PGEPDCLYYLRTGTCGYGSNCRFNHP 78 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.3 | 9.7e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f+++tGtCkyG++Ck++H++ XP_011100471.1 100 KPDCGFYLKTGTCKYGSTCKYHHPK 124 689********************96 PP | |||||||
3 | zf-CCCH | 32.2 | 1.8e-10 | 156 | 178 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG CkF+H++ XP_011100471.1 156 ACPYYMQTGLCKYGYACKFHHPQ 178 7********************97 PP | |||||||
4 | zf-CCCH | 37.1 | 5.3e-12 | 280 | 304 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++ G CkyG++CkF+H+ XP_011100471.1 280 DQPECQYYMNHGSCKYGSNCKFHHP 304 689*********************8 PP | |||||||
5 | zf-CCCH | 33.6 | 6.6e-11 | 327 | 350 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C++++ +G CkyG++CkF H+ XP_011100471.1 327 LPVCSYYSLYGLCKYGPTCKFDHP 350 589********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.464 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-6 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-9 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 57 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-5 | 58 | 77 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.746 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 98 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-6 | 102 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 103 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-6 | 150 | 179 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.751 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 152 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-8 | 155 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 155 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-5 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.042 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 280 | 304 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-7 | 280 | 308 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 284 | 304 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 323 | 350 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.014 | 324 | 352 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-8 | 327 | 350 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 329 | 349 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MPGNRKLQRN AGLSSSSSSA ADKVEEVKGR LKMEGSDDNG GVGDDRGLFP DRPGEPDCLY 60 YLRTGTCGYG SNCRFNHPSN AGGQVHGVKN TSELPERAGK PDCGFYLKTG TCKYGSTCKY 120 HHPKDRQGDN RPKDSKPDSL ILLNILGLPM RQDGKACPYY MQTGLCKYGY ACKFHHPQPT 180 SAANVLPVVG PVYGSGASAV APSSGAPSVG EIPAPTLPKA TYFSSSLLHV PQSYMPIILS 240 PSQGWNTYTG SVSPLSVTSV LTAPASDGQL PVPYLPQRPD QPECQYYMNH GSCKYGSNCK 300 FHHPIKKITQ LPPSSLGPLG LPLRPGLPVC SYYSLYGLCK YGPTCKFDHP LDGYAYAYSL 360 SVPPLSAPYS PSSPYQSTSS LAPSSETSPS KPSKLNDWIK KGVPASNKSR HSNTKSGRDS 420 PDVSDSQPRS SKTSSEIMQN ESD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100471.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100471.1 | 0.0 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
TrEMBL | A0A4D8XVR1 | 0.0 | A0A4D8XVR1_SALSN; Uncharacterized protein | ||||
STRING | Migut.H01247.1.p | 1e-168 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13571 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-75 | C3H family protein |