PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100432.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HB-other | ||||||||
Protein Properties | Length: 209aa MW: 24060.9 Da PI: 9.0046 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 44 | 99 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+eq++e+e++F+++++p+ ++r+eL++klgL+ qVk+WFqN+R++ k XP_011100432.1 44 RKRYHRHTPEQIQEMEAFFKQHPHPNNNQRKELSNKLGLEPLQVKFWFQNKRTQLK 99 78999***********************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 25 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.09E-19 | 34 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.422 | 41 | 101 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-17 | 43 | 105 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.2E-18 | 44 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.20E-16 | 44 | 99 | No hit | No description |
PRINTS | PR00031 | 8.0E-5 | 72 | 81 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 76 | 99 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-5 | 81 | 97 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MLPDMNSTAS GGDESQRNRD DGINNKSSRE DLDNNSINNQ ELKRKRYHRH TPEQIQEMEA 60 FFKQHPHPNN NQRKELSNKL GLEPLQVKFW FQNKRTQLKT WNEHHKNSYF RTENNELRTE 120 NMRCREALSN ARCRACGCAI ALAGKSSNEH CLRVENAQLR EQIEYLAAIL AKFVGKPLAD 180 DAVTPSSTAS PTVDTEAVRK LKGKQKIEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100432.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657309.1 | 9e-61 | PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 | ||||
Swissprot | Q0J9X2 | 4e-59 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | A0A2G9HLE3 | 5e-63 | A0A2G9HLE3_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2P2K237 | 8e-59 | A0A2P2K237_RHIMU; Homeobox-leucine zipper protein HDG2 isoform X3 | ||||
TrEMBL | D7TEM3 | 1e-58 | D7TEM3_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0059g02310.t01 | 2e-59 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13806 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.3 | 2e-56 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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