PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27762.3 Da PI: 7.0753 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l v+++G ++W++ + g+ R++k+c++rw +yl XP_011100426.1 14 KGAWSEDEDNKLRAHVERYGHPNWRLLPIFAGLARCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ E++l++++++qlG++ W++Ia++++ gRt++++k++w+ XP_011100426.1 67 RGNFTKNEEDLIIKLHAQLGNR-WSAIAAKLP-GRTDNEVKNYWHA 110 89********************.*********.***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.748 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.82E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.959 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-26 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.94E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVRTPSFDSH GIKKGAWSED EDNKLRAHVE RYGHPNWRLL PIFAGLARCG KSCRLRWMNY 60 LRPGLKRGNF TKNEEDLIIK LHAQLGNRWS AIAAKLPGRT DNEVKNYWHA HIKKRSSKRD 120 RATRKAIKPE TAQELRSSEI NMCTTNTVQE EPASENVPVQ NPKTVVAVDS VEQAEGDLLA 180 ELVNSQLKIN LPPTAEEDLY GLGLCQEMQS NESACCFDSS YAGCAEAQGN FWSEQFGDDA 240 FLVVLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 115 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100426.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100426.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | Q6K1S6 | 6e-53 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A022QC53 | 3e-76 | A0A022QC53_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M00366.1.p | 1e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 6e-55 | myb domain protein 13 |
Publications ? help Back to Top | |||
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