PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100396.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 890aa    MW: 102122 Da    PI: 7.405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.15.5e-27133235291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                     fY+eYA++vGF++ +++s++sk+++e+++++f Cs++g+++e +k+             +e++  +ra  +t+Cka+++vk+++dgkw ++++e+
  XP_011100396.1 133 FYQEYARSVGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSlnrprsrqgsnqdAENATGRRACAKTDCKASMHVKRRSDGKWIIHRFEK 227
                     9*****************************************999999***999988776677779***************************** PP

            FAR1  84 eHnHelap 91 
                     eHnHel p
  XP_011100396.1 228 EHNHELLP 235
                     *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-25133235IPR004330FAR1 DNA binding domain
PfamPF105512.7E-27333425IPR018289MULE transposase domain
PROSITE profilePS509669.458613649IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-4615646IPR007527Zinc finger, SWIM-type
SMARTSM005758.3E-8624651IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MWWQLFFTFL FFTSNYQIIY VAFWRKGCCR TVFCRREKRT VVTMDIDLRL PSGGHDKEVE  60
EEPNGIVNML DGEEKPLNVD GVGGSMGDVE EKLQIEDAED VNSPIHDIDF KDVTILEPLP  120
GMEFGSHGDA YAFYQEYARS VGFNTAIQNS RRSKTSREFI DAKFACSRYG TKREYEKSLN  180
RPRSRQGSNQ DAENATGRRA CAKTDCKASM HVKRRSDGKW IIHRFEKEHN HELLPAQAVS  240
EQTRRMYAAM ARQFAEYKSA VGLKHDSRSH FEKGRNMAMD AGEANMLLDF FVQMQSLNSN  300
FFYAVDVGED QRLKNLLWID AKSRHDYPNF SDVVSFDTSY VRNKYKMPLA LFVGVNQHYQ  360
FMLLGCALVS DESEATFSWV MQTWLKAMGG QAPKIIITDQ DKVMKSVTAD AFPSTLHFFC  420
LWNIMGKVSE TLNHVIKQNE NFMSKFEKCV YRSWTDDEFD KRWHKLVNRF GLKENELMQS  480
LYEDRKKWVP NFMKDGFFAG MSTGQRSESV NSFFDKYVHK KTTMQEFIKQ YEAILQDRYE  540
EEAKASSDTW NKQPSLKSPS PFEKHVAGLY THAVFRKFQV EVLGAVACIP KREEQVDATI  600
TFKVQDFERN QEFIVTLNEL KSEVSCICRL FEFKGFLCRH AMIVLQICGI SNIPSQYILK  660
RWTKDAKSRY PMGEGSEQVQ SRLQRYNDLC QRAIKLGEEG SFSQESYNLT LRALDDAFET  720
CLNANNSCKN LLEAGPSSSP ALLCIEEDIQ SGNLSKTNKK KSSTKKRKVN MEPDVITVGT  780
PESLQQMEKL NSRPVNLDGF FGAQQGVQGM VQLNLMAPTR DNYYGNQQTI QGLGQLNSIA  840
PTHDGYYGTQ PAIHGLGQMD FFRTPSFGYG IREDPNVRSA QLHDDAPRHA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100396.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100396.10.0protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A2G9GLI30.0A0A2G9GLI3_9LAMI; Uncharacterized protein
STRINGMigut.M00094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3
Publications ? help Back to Top
  1. Chang N,Gao Y,Zhao L,Liu X,Gao H
    Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel.
    Sci Rep, 2015. 5: p. 9612
    [PMID:25872642]
  2. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  3. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  4. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  5. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  6. Li D, et al.
    FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80
    [PMID:27469166]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]