PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100390.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 449aa    MW: 48550.2 Da    PI: 5.5378
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.61.7e-112894463374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ ++l  a +lL ++ el+sp g++ qR+ ayf+ AL+ar+ +s  ++y+ l+p ++s  ++++ l+al++++ ++P++kfsh+t
  XP_011100390.1  89 GLLLQCAECVAVDNLDDAGQLLPEIAELSSPFGSSAQRVGAYFADALSARVISSYLGTYSPLTPLSKS--HHQKLLNALQIYNSITPLIKFSHFT 181
                     58*********************************************************988777666..69999******************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     aNqaI +av+g+++vH+iD+di+qGlQWp L++ Las++++  s+RiTg+gs    s+e l++tg+rLa+fA++l +pf+f++l  k  +  +l+
  XP_011100390.1 182 ANQAIQQAVDGADHVHVIDLDIMQGLQWPGLFHILASKSRKLKSFRITGLGS----SAELLSSTGQRLAEFASALSIPFQFQPLEGKIGNVTDLN 272
                     ****************************************************....9**************************9777777779** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     +L++k gE+++V++++  h l+d ++s        L+l+  ++Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l++es er++vE+
  XP_011100390.1 273 QLDIKMGETVIVHWMH--HCLYDVTGSDLG----ALRLFTLIRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDSLGAESVERHTVEQ 360
                     ***************9..888888888888....9*********************.789*********************************** PP

            GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +llg ei+n+va  g +r+ + + +e+W + l ++GF+pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_011100390.1 361 QLLGCEIRNIVAVGGPKRTGEVK-VERWGDELVRVGFRPVSLAGNPAAQANLLLGMFPWQGYTLVEENGCLKLGWKDLSLLTASAWQ 446
                     *****************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.10261426IPR005202Transcription factor GRAS
PfamPF035145.9E-11089446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLHSLLTTTT ANNPSASMTS AGKRPVDLSS TDVSDPVKRL RSHLSPEQDP QPDEEGGKEA  60
GPQFLPPAAA SSAAQYESDS DATGLRLLGL LLQCAECVAV DNLDDAGQLL PEIAELSSPF  120
GSSAQRVGAY FADALSARVI SSYLGTYSPL TPLSKSHHQK LLNALQIYNS ITPLIKFSHF  180
TANQAIQQAV DGADHVHVID LDIMQGLQWP GLFHILASKS RKLKSFRITG LGSSAELLSS  240
TGQRLAEFAS ALSIPFQFQP LEGKIGNVTD LNQLDIKMGE TVIVHWMHHC LYDVTGSDLG  300
ALRLFTLIRP KLITIVEQDL SHGGSFLGRF VEALHYYSAL FDALGDSLGA ESVERHTVEQ  360
QLLGCEIRNI VAVGGPKRTG EVKVERWGDE LVRVGFRPVS LAGNPAAQAN LLLGMFPWQG  420
YTLVEENGCL KLGWKDLSLL TASAWQPMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1608144713380Protein SCARECROW
5b3h_A1e-1608144712379Protein SCARECROW
5b3h_D1e-1608144712379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100390.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-176SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2Z7A7200.0A0A2Z7A720_9LAMI; Uncharacterized protein
STRINGXP_006481359.10.0(Citrus sinensis)
STRINGXP_006429765.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-174GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]