PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100356.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C3H

Protein Properties

Length: 397aa MW: 44489.9 Da PI: 7.9017

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	131	151	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G+C+ Gd+C F+Hg XP_011100356.1 131 VCSEFRK-GHCSKGDNCEFSHG 151 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-5	126	152	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.225	127	153	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.81E-5	128	151	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-4	130	153	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-5	131	151	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.165	161	185	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7	161	184	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010187	Biological Process	negative regulation of seed germination
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MMGSVCAEQQ HKFHHSHQLY LTKKSLREID IPPRKLLSRR SSAPSPSPAD MSFMMDSPKA 60 EDTVFSKFLP CNNLDDDDSD PYSSDHFRMY EFKVRKCNRS RSHDWTDCPF AHPGEKARRR 120 DPRRYHYSGT VCSEFRKGHC SKGDNCEFSH GVFECWLHPT RYRTEACKDG KNCKRKVCFF 180 AHSTRQLRIL PETSPPHSPR MNSPTTMEKK YRSLNQCCLF CHSMTASPTS TLMGNMSHAS 240 PPLSPPISPV CSSDFSLYGD RYGNIEAYGD RFGNLGSCCT LPKLNGGGGT GMSYKDALTE 300 LMASFEAMNV NHEAVSSPAA VSSGNLPWLD VNFNVEEQPQ FLLSPSTPTP TATAASRGHG 360 KFFHGEFSGR NLMEDSRYNS ESNLAGPDLG WVNDLLT

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MMGSVCAEQQ HKFHHSHQLY LTKKSLREID IPPRKLLSRR SSAPSPSPAD MSFMMDSPKA  60
EDTVFSKFLP CNNLDDDDSD PYSSDHFRMY EFKVRKCNRS RSHDWTDCPF AHPGEKARRR  120
DPRRYHYSGT VCSEFRKGHC SKGDNCEFSH GVFECWLHPT RYRTEACKDG KNCKRKVCFF  180
AHSTRQLRIL PETSPPHSPR MNSPTTMEKK YRSLNQCCLF CHSMTASPTS TLMGNMSHAS  240
PPLSPPISPV CSSDFSLYGD RYGNIEAYGD RFGNLGSCCT LPKLNGGGGT GMSYKDALTE  300
LMASFEAMNV NHEAVSSPAA VSSGNLPWLD VNFNVEEQPQ FLLSPSTPTP TATAASRGHG  360
KFFHGEFSGR NLMEDSRYNS ESNLAGPDLG WVNDLLT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100356.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100356.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9ZWA1	6e-83	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2G9HCH7	1e-179	A0A2G9HCH7_9LAMI; CCCH-type Zn-finger protein
STRING	XP_009789499.1	1e-152	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10595	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	3e-75	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]