PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 32410.8 Da PI: 5.8665 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed +l +v+++G +W++ +++ g+ R++k+c++rw +yl XP_011100326.1 14 KGAWSDDEDNKLRAYVQRYGHWNWRLLPKYAGLARCGKSCRLRWVNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.2e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ l v++++qlG++ W++Ia+ ++ gRt++++k++w++ XP_011100326.1 67 RGNFSKEEEALVVKLHNQLGNK-WSAIAANLP-GRTDNEIKNFWHT 110 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.186 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.65E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.348 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.47E-11 | 69 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 69 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MVRPPYVDSN GLKKGAWSDD EDNKLRAYVQ RYGHWNWRLL PKYAGLARCG KSCRLRWVNY 60 LKPGVKRGNF SKEEEALVVK LHNQLGNKWS AIAANLPGRT DNEIKNFWHT RIERRRNGNP 120 AHKKAKGHTA ADKPSSKAQV LTQDKPSELT LSETLTLNES ASSDSLINLQ NSTLSVDTNS 180 TSGSASESQV DCWADTFLGS TDYSQEGCFQ PLPEEEFLIH SELSTSESSY PSALCWNADD 240 DLSIMSPDFW GGSFVSNTSN SESETSYIST QEMGGFYDPF LEYIHHQLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 12 | 115 | 5 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100326.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100326.1 | 0.0 | myb-related protein Myb4 | ||||
TrEMBL | A0A0K1SBF4 | 2e-95 | A0A0K1SBF4_REHGL; R2R3-MYB protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 6e-53 | myb domain protein 15 |