PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100326.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 289aa    MW: 32410.8 Da    PI: 5.8665
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ +Ed +l  +v+++G  +W++ +++ g+ R++k+c++rw +yl
   XP_011100326.1 14 KGAWSDDEDNKLRAYVQRYGHWNWRLLPKYAGLARCGKSCRLRWVNYL 61
                     79******************99************************97 PP

2Myb_DNA-binding53.65.2e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+ l v++++qlG++ W++Ia+ ++ gRt++++k++w++
   XP_011100326.1  67 RGNFSKEEEALVVKLHNQLGNK-WSAIAANLP-GRTDNEIKNFWHT 110
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.186961IPR017930Myb domain
SuperFamilySSF466891.65E-2811108IPR009057Homeodomain-like
SMARTSM007171.3E-101363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-211568IPR009057Homeodomain-like
CDDcd001673.65E-91661No hitNo description
PROSITE profilePS5129423.34862116IPR017930Myb domain
SMARTSM007172.3E-1566114IPR001005SANT/Myb domain
PfamPF002494.9E-1567110IPR001005SANT/Myb domain
CDDcd001672.47E-1169110No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2469114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVRPPYVDSN GLKKGAWSDD EDNKLRAYVQ RYGHWNWRLL PKYAGLARCG KSCRLRWVNY  60
LKPGVKRGNF SKEEEALVVK LHNQLGNKWS AIAANLPGRT DNEIKNFWHT RIERRRNGNP  120
AHKKAKGHTA ADKPSSKAQV LTQDKPSELT LSETLTLNES ASSDSLINLQ NSTLSVDTNS  180
TSGSASESQV DCWADTFLGS TDYSQEGCFQ PLPEEEFLIH SELSTSESSY PSALCWNADD  240
DLSIMSPDFW GGSFVSNTSN SESETSYIST QEMGGFYDPF LEYIHHQLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100326.10.0myb-related protein Myb4
TrEMBLA0A0K1SBF42e-95A0A0K1SBF4_REHGL; R2R3-MYB protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.16e-53myb domain protein 15