PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100294.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 421aa MW: 47845.7 Da PI: 9.6405 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.4 | 9.2e-07 | 7 | 31 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC+ ++r G C++ C+FaHg+ XP_011100294.1 7 YKTKLCMLYQR-GRCSR-QYCNFAHGE 31 9**********.*****.*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-10 | 3 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.3E-5 | 4 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.007 | 6 | 31 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.296 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-4 | 7 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MVEKKLYKTK LCMLYQRGRC SRQYCNFAHG EAELRRSFNG RQEYRGGRDL RERLDRMRSP 60 LHNSPGRGDT KARYSSHVAG DSPRSPGKRI DRNNRKRKQL DGHSDYSGRM SDGTEDQIRD 120 RRQTSSDTKM RIDEQLRELH SEIKMLESDK RQLEVYLEDK VKEADALTLK IHELEMQVSK 180 EKEEGKRFTT KIKKFIKAHN RHLRLQDDLK RSHAQLLKLG EQLDLDAAGP GNADDLKINN 240 TSDDIVGGYA LSPLNEDHMN SSPHRKRSRV TLEARDISNR VNPAGERAEI GKMRVEKLSR 300 RSENRDQVSN SRKPEADRDA YNGRGPLAYE DKSRRGTNLP ADIASADKYK VSETGLLLPS 360 TGIAAHAMDE DVEVVETEDK LPAGVAASTG DETEVTLKGS RLPFLPPPPP PIPQDVYLQL 420 L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100294.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100294.1 | 0.0 | zinc finger CCCH domain-containing protein 13 isoform X3 | ||||
TrEMBL | A0A2G9HLC7 | 0.0 | A0A2G9HLC7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00396.1.p | 1e-168 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 8e-37 | C3H family protein |