PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100293.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 440aa    MW: 49984.8 Da    PI: 7.7456
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.7e-07731127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ykt+lC+ ++r G C++   C+FaHg+
  XP_011100293.1  7 YKTKLCMLYQR-GRCSR-QYCNFAHGE 31
                    9**********.*****.*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-10335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.69E-5435IPR000571Zinc finger, CCCH-type
SMARTSM003560.007631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.296632IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVEKKLYKTK LCMLYQRGRC SRQYCNFAHG EAELRRSFNG RQEYRGGRDL RERLDRMRSP  60
LHNSPGRGDT KARYSSHGDS PRSPGKRIDR NNRKRKQLDG HSDYSGRMSD GTEDQIRDRR  120
QTSSDTKMRI DEQLRELHSE IKMLESDKRQ LEVYLEDKVK EADALTLKIH ELEMQVSKEK  180
EEGKRFTTKI KKFIKAHNRH LRLQDDLKRS HAQLLKLGEQ LDLDAAGPGN ADDLKINNTS  240
DDIVGGYALS PLNEDHMNSS PHRKRSRVTL EARDISNRVN PAGERAEIGK MRVEKLSRRS  300
ENRDQVSNSR KPEADRDAYN GRGPLAYEDK SRRGTNLPAD IASADKYKVS ETGLLLPSTG  360
IAAHAMDEDV EVVETEDKLP AGVAASTGDE TEVTLKGSRL PFLPPPPPPI PQDVYLQYKG  420
DDENVDVDGV DEETVEVDIV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100293.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100293.10.0zinc finger CCCH domain-containing protein 13 isoform X2
TrEMBLA0A2G9HLC70.0A0A2G9HLC7_9LAMI; Uncharacterized protein
STRINGMigut.M00396.1.p1e-177(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-37C3H family protein