PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100282.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 447aa    MW: 49273.5 Da    PI: 4.5981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-152473148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     +g+WTt Ed +lv++vk++G g+W+++         R++k+c++rw ++l
   XP_011100282.1 24 KGPWTTSEDMILVEYVKKHGEGNWNAVQXXXXxxXXRCGKSCRLRWANHL 73
                     79********************************************9986 PP
2Myb_DNA-binding52.31.3e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++l+v+++++lG++ W++ a+ ++ gRt++++k++w++
   XP_011100282.1  79 KGAFSAEEEKLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 122
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9141973IPR017930Myb domain
SuperFamilySSF466897.11E-2922120IPR009057Homeodomain-like
SMARTSM007174.2E-132375IPR001005SANT/Myb domain
PfamPF002499.0E-142473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-212580IPR009057Homeodomain-like
CDDcd001673.84E-102673No hitNo description
PROSITE profilePS5129425.43274128IPR017930Myb domain
SMARTSM007174.5E-1678126IPR001005SANT/Myb domain
PfamPF002491.9E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2581127IPR009057Homeodomain-like
CDDcd001671.23E-1181124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAPDASGGLR NPSSAIKSKN ALKKGPWTTS EDMILVEYVK KHGEGNWNAV QXXXXXXXXR  60
CGKSCRLRWA NHLRPNLKKG AFSAEEEKLI VELHAKLGNK WARMAAQLPG RTDNEIKNYW  120
NTRLKRRQRA GLPVYPEEVV QQEKHQQLNS SSSVLASSHR PNQIPLNFYE TFNSQPMIAP  180
PQNQPNAPYI NHQLKLYRAS NGSLALSLAN SNSSFTPSVL PAAPFFSQGL SNPLPIPSLL  240
QYNSLNYDIN TDPEIRVVGL PSIQSSVQGT VTPAASSSDF VMGTTSSDAA DDQYDVETSF  300
SRCNNSGLLE DLFEESRALA CPEKQEDPFV AAAENLHEEA TGFEFGQENA SSDNNYKGLE  360
TKAPGEAIAS MDDDLMNLLD NFPLSVPIPD WDEGNDSDSP VLTNDTNETV ENQTDASQYN  420
PVAASMGTSN QDWNFGSCLW NNMPSIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30221275107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100282.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100282.20.0transcription factor MYB101
TrEMBLA0A075BMI01e-152A0A075BMI0_SALMI; MYB-related transcription factor
STRINGMigut.M00456.1.p1e-149(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-67myb domain protein 101