PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100239.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 463aa    MW: 50536.8 Da    PI: 8.7528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-055575323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  XP_011100239.1 55 CEICGKGFQRDQNLQLHRRGH 75
                    *******************88 PP
2zf-C2H212.90.00034129151123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_011100239.1 129 WKCDKCSKRYAVQSDWKAHSKTC 151
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-55275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.47E-65275No hitNo description
PROSITE profilePS5015711.4895375IPR007087Zinc finger, C2H2
SMARTSM003550.0765375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.47E-6124149No hitNo description
SMARTSM00355140129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MTEEVISIGS TANPVSGSNP PPAKKKRNLP GTPDPEAEVI ALSPQTLMAT NRFLCEICGK  60
GFQRDQNLQL HRRGHNLPWK LKQRSSKEVR KRVYVCPEKT CVHHHPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAL  180
AEETARVTAA SHMNNHAASI NYHFIGSSLG QPAAVGQHFS SIFKPILSNT DQNIDPIPMG  240
RGLSLWNMGP GPVHDSIAKN LQDMQPMGVT VSSGAVNNFT HHVHSLINNP CSNPLPSTYN  300
QMNWDFGNKI SSNGDDHHDL TNNPLPVKEV SVPSLFSTQN QSHQPTTATI SATALLQKAA  360
EIGATTNDPS FLGNFGLKGS DNISVQDGNK LCGLYGTSSA TSGLGSDVES SVNDLSALNQ  420
MEMYSSKRRR VANGHEITGG ETRDFLGVGV QSICHPSSIN GWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36125194372Zinc finger protein JACKDAW
5b3h_F4e-36125194372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426430KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100239.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100239.10.0zinc finger protein NUTCRACKER
SwissprotQ9ZWA61e-155IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I00.0A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGEOX995370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-157C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]