PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100183.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 286aa    MW: 31828.7 Da    PI: 6.0919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-1498149155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i+  A++++k+L+
  XP_011100183.1  98 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YSQRGDQASIVGGAINFVKELE 149
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.60E-1496153No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1396152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-1796168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.85397148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1298149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MALDAVIFDP FIYGCKDYSY NMGGFGGFGL PPLQEESPNP ENLDISGHYW DSPPPSSVAQ  60
NTTSSPETYG GAGDGLGGCC RKRRRTKSLK NQEEMENQRM THIAVERNRR RQMNDYLAVL  120
RSLMPPSYSQ RGDQASIVGG AINFVKELEQ LLQFLEAHKP SNQQHPNAAH SSLFSNFFTF  180
PQYSTXVQAA AERLSSVADV EVMMVESHAN IKILTKKRPR QLLKMVAGFQ SICLTILHLN  240
ITTVDQSVLY SFSVKVEDEC QLSTVNEIAT TVHDIVGMIQ EESLSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18084RKRRR
28085RKRRRT
398109RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100183.20.0LOW QUALITY PROTEIN: transcription factor bHLH96-like
SwissprotQ9C7T43e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2G9I4C81e-151A0A2G9I4C8_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1
STRINGXP_010272971.11e-107(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]