PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 245aa MW: 28381.8 Da PI: 7.3809 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.7 | 7.7e-19 | 180 | 214 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + +Tp+WR gp+g+ktLCnaCG++y++ +l XP_011100134.1 180 CSHCEAENTPQWRMGPEGPKTLCNACGVRYKSGRL 214 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 8.08E-13 | 173 | 215 | No hit | No description |
PROSITE profile | PS50114 | 12.215 | 174 | 210 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.0E-16 | 174 | 224 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.9E-15 | 178 | 212 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.96E-13 | 179 | 226 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 180 | 205 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-16 | 180 | 214 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MYSYICLSCI CLLLLSFQTV VDSSPDYGDL SGVTTTSDGL MFEHHDFCSN DSDEISQLCV 60 PQDRLEDLDL FPDFADDLIL FRFSEQDYNF GEIELEKNPK KDFRDTEMKP FFAKDSSSSD 120 DDVGEVSFSP PDEYSTQHKI NDDRNALRAN LSKKPRSKRP NRLDSLQTKS RNNFTKRRRC 180 SHCEAENTPQ WRMGPEGPKT LCNACGVRYK SGRLVPAASP TFDRMKHSNY HRRIMQKKIT 240 FRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100134.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100134.1 | 0.0 | GATA transcription factor 4-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5776 | 19 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 4e-27 | GATA transcription factor 12 |