PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 318aa MW: 35800.2 Da PI: 7.7276 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 49.1 | 8.9e-16 | 238 | 263 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yG++C+FaHg XP_011100111.1 238 FKTELCNKWQETGTCPYGENCQFAHG 263 79***********************8 PP | |||||||
2 | zf-CCCH | 21.2 | 5e-07 | 276 | 301 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ XP_011100111.1 276 YKTEVCRMVLAGDICPYGHRCHFRHS 301 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-19 | 233 | 270 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-11 | 234 | 269 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.455 | 237 | 265 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-9 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-12 | 238 | 263 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-9 | 271 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-12 | 271 | 304 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 275 | 302 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 275 | 303 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MQNENVSFDA LTTTTTSAAA SAPLYFSRSN PFLSPTSPSY LNSSASFYSS LFQNYSPNSI 60 SDTASFDGGD TERRLHDASC ILEYQQLYNR YTLCLSQLHD SIEEVDALRR ENDSLRVSNA 120 DLSHRVALLF SRDRLLSEFN RLNIASPSSA VPLPVHVASP QPLIEHNRVE RINTERVSLP 180 KSISVRSRGY LKMTRPGRDT SRHKTVSEPC PASQRVCIPG AKKEEEALEF DVYNQGMFKT 240 ELCNKWQETG TCPYGENCQF AHGIKELRPV IRHPRYKTEV CRMVLAGDIC PYGHRCHFRH 300 SLTEQERLLA VPSPAPPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-22 | 238 | 304 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100111.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ076102 | 1e-39 | KJ076102.1 Sesamum indicum clone TilSSR_47303 microsatellite Sesame_47303 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100111.1 | 0.0 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q9C9N3 | 8e-78 | C3H14_ARATH; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2G9GXG6 | 0.0 | A0A2G9GXG6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00243.1.p | 1e-161 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7784 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-79 | C3H family protein |