PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 30432.5 Da PI: 9.6658 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw++yl XP_011100106.1 10 KGAWTKEEDVLLTKCIEKHGEGKWHQVPIKAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++E +l+v+++k+lG++ W++Ia +++ gRt++++k++w+++ XP_011100106.1 63 RGLFTKDEVDLIVRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNTH 107 788*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.914 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-28 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-21 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.34E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 24.602 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-23 | 65 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.85E-10 | 66 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MEHKAVGLRK GAWTKEEDVL LTKCIEKHGE GKWHQVPIKA GLNRCRKSCR LRWLNYLRPN 60 IKRGLFTKDE VDLIVRLHKL LGNRWSLIAG RLPGRTANDV KNFWNTHVKK LSGGGSCKEK 120 TMQKDITKSN IIRPRPWTFS KSQLTARAAW LSEPSKTNHE NPENKKPMST SPSSPLQNDD 180 ANLIKSTQPP YSSSHEAADE CFQWWSNLLE LTENRVDGLN TLSFSDVDGP QMEPLLLSSN 240 NYVNERGFSS LWGDVDVWEL VNFHDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-22 | 8 | 110 | 5 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100106.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100106.1 | 0.0 | transcription factor MYB90-like | ||||
Swissprot | Q9FNV9 | 2e-63 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2G9H3L0 | 8e-84 | A0A2G9H3L0_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.H00278.1.p | 3e-73 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 7e-66 | myb domain protein 113 |
Publications ? help Back to Top | |||
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