PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100098.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 334aa    MW: 37250.7 Da    PI: 6.6864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+ +++++G+g +W + ++++g++R++k+c++rw++yl
   XP_011100098.1 14 KGPWSPEEDATLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding37.74.7e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T++Ed l+  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_011100098.1  69 GGFTEDEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.214962IPR017930Myb domain
SuperFamilySSF466896.94E-2711109IPR009057Homeodomain-like
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002491.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-251569IPR009057Homeodomain-like
CDDcd001671.20E-91662No hitNo description
PROSITE profilePS5129421.61963117IPR017930Myb domain
SMARTSM007176.6E-1167115IPR001005SANT/Myb domain
PfamPF002499.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2370117IPR009057Homeodomain-like
CDDcd001673.81E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEDEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRREFTQALR NSRQLENSKA CETSYSINGC FSLYRQSPQP VALPLLVESS ASQENQASNS  180
SLPHMFQPEE KLSYNHDHTQ PNNLEQNFGT FHCMSDVSCA QNHEQLCENM TCSSFPNSSC  240
SQLGSDLNTN FPAFGGIPEE IMYSMPQQLD GLDGFSAVDV VNCSSISSSV SENLGDTSSI  300
IYASALTLTN YGVCHQKVAQ EWTYLDEARL LGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100098.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100098.10.0transcription factor RAX3-like
TrEMBLA0A2Z7CIJ92e-97A0A2Z7CIJ9_9LAMI; Uncharacterized protein
STRINGVIT_00s1352g00010.t011e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-79myb domain protein 84