PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011099869.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SBP

Protein Properties

Length: 1081aa MW: 120112 Da PI: 7.4544

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011099869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.3e-40	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrr+k++ XP_011099869.1 157 VCQVDNCNEDLSTAKDYHRRHKVCEVHSKAVKALVGQQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRRKTQ 234 6************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.0E-34	152	219	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.821	155	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-36	156	233	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-29	158	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.69E-6	829	969	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.4E-5	829	984	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1081 aa Download sequence Send to blast
MMEDLGAQLV APTVIHQSLS GRFCDSYPMP KKRGLPFHSS TYIHQNASDN WNPKFWDWDS 60 SRFVAKPLQC DEIHAGNGTQ IHPGLPRRKE LQINAQNPRK LDSAGEDNEN LRLKLGGGDG 120 ARSDSSSGVV NLMEPQPVSR PNKRVRSGSP GGANYPVCQV DNCNEDLSTA KDYHRRHKVC 180 EVHSKAVKAL VGQQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR RKTQPEDSAA 240 RLLVPGSHEN NVGDIDVAKL LAVLARVQGN PEDRSSKVAS IPDKDQLIQI LSKISSLPLP 300 ADVTARLRGS IPNLLSSENL NQMNGNASSR STMNLLAVLS ATPGVPSFDA FANHSQPSTE 360 GSDSEKSKSV CVDQAARLNV HRGPMMESPT VGGERTSTSY DSPMEEVDFH VQETSPSLPL 420 QLFTPSPEDY RSTKSPSYRN FLSCGSSNHS EERSPMSSPP VVHDLFPMQT SREIMKDKHL 480 SNSEGEIANA KQTISNECST SLQLFRDSTL ATENGSNQSS PYQAGYTSSS GSDHSPSSLN 540 SDAQDRNGRI IFKLFDKDPS YMPRSLRAQI YNWLSNSPSE MESYIRPGCI VLSLYLSMPS 600 FAWDQLEENL LNYVKSLVKD IDVDFWGNGR FLVHTDRQMA SHKDGRIRLC KSWRAWSTPE 660 LISVSPLAVV GGQETSLLLR GRSLTGPGTK IHCTHASEYN IRQVAASSCL DSAYEEISLD 720 SFKVDRAASG VLGRCFIEVE NSFRGTSFPV IIADDTICEE LRLLEPGING TAEVCGGIAA 780 DHIHNTGRPR SREEILHFLD ELGWLFQRKH NSFLFGIPDY RLSRFRFLLI FSVEHDFCAV 840 VKTLLDILLE LNLVRHGLAR QSLEMLSEIH LLNRAVKRRC RSMVDLLIHY SVDSTDTYEK 900 YIFLPNMAGP GGVTPLHLAA CMSSSDDMVD ALTSDPQEMG LQSWNSVLDA NGLSPYAYAL 960 MRNNHSYNAL VARKLADRNN CQISVSVNDE IEQVELEKDK DKRTISHFNQ KLKSCSRCSV 1020 LASCGYSKRF LGSKGLLQRP YIHSMLVVAA VCVCVCLFLR GHPSVGCVSP FVWDNLGYGA 1080 F

Sequence ? help Back to Top

Protein Sequence Length: 1081 aa Download sequence Send to blast

MMEDLGAQLV APTVIHQSLS GRFCDSYPMP KKRGLPFHSS TYIHQNASDN WNPKFWDWDS  60
SRFVAKPLQC DEIHAGNGTQ IHPGLPRRKE LQINAQNPRK LDSAGEDNEN LRLKLGGGDG  120
ARSDSSSGVV NLMEPQPVSR PNKRVRSGSP GGANYPVCQV DNCNEDLSTA KDYHRRHKVC  180
EVHSKAVKAL VGQQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR RKTQPEDSAA  240
RLLVPGSHEN NVGDIDVAKL LAVLARVQGN PEDRSSKVAS IPDKDQLIQI LSKISSLPLP  300
ADVTARLRGS IPNLLSSENL NQMNGNASSR STMNLLAVLS ATPGVPSFDA FANHSQPSTE  360
GSDSEKSKSV CVDQAARLNV HRGPMMESPT VGGERTSTSY DSPMEEVDFH VQETSPSLPL  420
QLFTPSPEDY RSTKSPSYRN FLSCGSSNHS EERSPMSSPP VVHDLFPMQT SREIMKDKHL  480
SNSEGEIANA KQTISNECST SLQLFRDSTL ATENGSNQSS PYQAGYTSSS GSDHSPSSLN  540
SDAQDRNGRI IFKLFDKDPS YMPRSLRAQI YNWLSNSPSE MESYIRPGCI VLSLYLSMPS  600
FAWDQLEENL LNYVKSLVKD IDVDFWGNGR FLVHTDRQMA SHKDGRIRLC KSWRAWSTPE  660
LISVSPLAVV GGQETSLLLR GRSLTGPGTK IHCTHASEYN IRQVAASSCL DSAYEEISLD  720
SFKVDRAASG VLGRCFIEVE NSFRGTSFPV IIADDTICEE LRLLEPGING TAEVCGGIAA  780
DHIHNTGRPR SREEILHFLD ELGWLFQRKH NSFLFGIPDY RLSRFRFLLI FSVEHDFCAV  840
VKTLLDILLE LNLVRHGLAR QSLEMLSEIH LLNRAVKRRC RSMVDLLIHY SVDSTDTYEK  900
YIFLPNMAGP GGVTPLHLAA CMSSSDDMVD ALTSDPQEMG LQSWNSVLDA NGLSPYAYAL  960
MRNNHSYNAL VARKLADRNN CQISVSVNDE IEQVELEKDK DKRTISHFNQ KLKSCSRCSV  1020
LASCGYSKRF LGSKGLLQRP YIHSMLVVAA VCVCVCLFLR GHPSVGCVSP FVWDNLGYGA  1080
F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	148	231	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	873	878	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011099869.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099860.1	0.0	squamosa promoter-binding-like protein 14
Refseq	XP_011099869.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2G9GTF7	0.0	A0A2G9GTF7_9LAMI; Uncharacterized protein
STRING	Migut.C00339.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]