PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | SBP | ||||||||
Protein Properties | Length: 1081aa MW: 120112 Da PI: 7.4544 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.8 | 4.3e-40 | 157 | 234 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrr+k++ XP_011099860.1 157 VCQVDNCNEDLSTAKDYHRRHKVCEVHSKAVKALVGQQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRRKTQ 234 6************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.0E-34 | 152 | 219 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.821 | 155 | 232 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-36 | 156 | 233 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-29 | 158 | 232 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 2.69E-6 | 829 | 969 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.4E-5 | 829 | 984 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1081 aa Download sequence Send to blast |
MMEDLGAQLV APTVIHQSLS GRFCDSYPMP KKRGLPFHSS TYIHQNASDN WNPKFWDWDS 60 SRFVAKPLQC DEIHAGNGTQ IHPGLPRRKE LQINAQNPRK LDSAGEDNEN LRLKLGGGDG 120 ARSDSSSGVV NLMEPQPVSR PNKRVRSGSP GGANYPVCQV DNCNEDLSTA KDYHRRHKVC 180 EVHSKAVKAL VGQQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR RKTQPEDSAA 240 RLLVPGSHEN NVGDIDVAKL LAVLARVQGN PEDRSSKVAS IPDKDQLIQI LSKISSLPLP 300 ADVTARLRGS IPNLLSSENL NQMNGNASSR STMNLLAVLS ATPGVPSFDA FANHSQPSTE 360 GSDSEKSKSV CVDQAARLNV HRGPMMESPT VGGERTSTSY DSPMEEVDFH VQETSPSLPL 420 QLFTPSPEDY RSTKSPSYRN FLSCGSSNHS EERSPMSSPP VVHDLFPMQT SREIMKDKHL 480 SNSEGEIANA KQTISNECST SLQLFRDSTL ATENGSNQSS PYQAGYTSSS GSDHSPSSLN 540 SDAQDRNGRI IFKLFDKDPS YMPRSLRAQI YNWLSNSPSE MESYIRPGCI VLSLYLSMPS 600 FAWDQLEENL LNYVKSLVKD IDVDFWGNGR FLVHTDRQMA SHKDGRIRLC KSWRAWSTPE 660 LISVSPLAVV GGQETSLLLR GRSLTGPGTK IHCTHASEYN IRQVAASSCL DSAYEEISLD 720 SFKVDRAASG VLGRCFIEVE NSFRGTSFPV IIADDTICEE LRLLEPGING TAEVCGGIAA 780 DHIHNTGRPR SREEILHFLD ELGWLFQRKH NSFLFGIPDY RLSRFRFLLI FSVEHDFCAV 840 VKTLLDILLE LNLVRHGLAR QSLEMLSEIH LLNRAVKRRC RSMVDLLIHY SVDSTDTYEK 900 YIFLPNMAGP GGVTPLHLAA CMSSSDDMVD ALTSDPQEMG LQSWNSVLDA NGLSPYAYAL 960 MRNNHSYNAL VARKLADRNN CQISVSVNDE IEQVELEKDK DKRTISHFNQ KLKSCSRCSV 1020 LASCGYSKRF LGSKGLLQRP YIHSMLVVAA VCVCVCLFLR GHPSVGCVSP FVWDNLGYGA 1080 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-30 | 148 | 231 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 873 | 878 | RAVKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099860.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Refseq | XP_011099869.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2G9GTF7 | 0.0 | A0A2G9GTF7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C00339.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12887 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Publications ? help Back to Top | |||
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