PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099740.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 275aa    MW: 30614.7 Da    PI: 10.0742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-162164347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rWT  Ed ll  +vk++G+++W++Ia  ++ gRt+k+c+ rw + 
   XP_011099740.1 21 RWTRKEDNLLRALVKRYGPRSWDLIADNIP-GRTGKSCRIRWTNQ 64
                     8*****************************.***********985 PP
2Myb_DNA-binding49.59.6e-1671113145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r ++++eE+++++++++++G++ W+tIa+ ++ gRt++++k+ ++
   XP_011099740.1  71 RSAFSEEEQQRILQLHREFGNK-WATIASFFP-GRTDNHVKNQYH 113
                      789*******************.*********.*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1551469IPR017930Myb domain
SMARTSM007171.4E-131867IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-2818112IPR009057Homeodomain-like
PfamPF002493.4E-152164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-242172IPR009057Homeodomain-like
CDDcd001674.02E-152163No hitNo description
SMARTSM007171.8E-1170118IPR001005SANT/Myb domain
PROSITE profilePS5129413.61271120IPR017930Myb domain
PfamPF002491.4E-1371113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-1973115IPR009057Homeodomain-like
CDDcd001671.16E-973116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDAFPPSIQA NGKTECYRKW RWTRKEDNLL RALVKRYGPR SWDLIADNIP GRTGKSCRIR  60
WTNQLNPKVD RSAFSEEEQQ RILQLHREFG NKWATIASFF PGRTDNHVKN QYHALVGTRN  120
KKASGPSSSV YCPVPLKNGS PMGLSHYGSV STVPMGSQFP NVPYHGNNCF VIAPCFTAMP  180
DKPQMMPLFI GGVYGRDKSF VAALASNMSG LGPHSFRTIN LGSIHPSQRT SHGDSMMSNA  240
NSATLSELRP IAQPQQEVGT KDYQFIDFMG VGTSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-302211610104B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099740.10.0transcription factor MYB56-like
TrEMBLA0A2G9HU101e-80A0A2G9HU10_9LAMI; Transcription factor, Myb superfamily
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1678945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-38myb domain protein 105